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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGATCTTGTTGGTGAGCCAGAAATTGCTTCATTGGTCCAGCGGATAAAGgttggtaccttgcttcttgcttggatggctttcatttttcttattgtttcgttttggatgtgttggactgtggtgtggtacttttgctgaaagcag

Basic information

species Vitis vinifera
transcript Vv09s0002g08260.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g08260.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA10G43740.1 (Glycine max), 5'ss of exon 5
ATTGATCTTGTTGGTGAGCCAGAAATTGCTTCATTGGTCCAGCGGATAAAGgttggtaccttgcttcttgcttggatggctttcatttttcttattgtttcgttttggatgtgttggactgtggtgtggtacttttgctgaaagcag
| ||| || ||||||||  |||| |||||||| |||||||||||||||| |||||||  ||| || ||| ||    |  ||   | |||  || || |||| || |   || | |  |        ||| | | ||  | ||  |||
ACTGACCTAGTTGGTGAATCAGACATTGCTTCTTTGGTCCAGCGGATAAGGgttggtgtctttct-cttcctattctatctaagagtttaatttttatttcattattt-tgagctccatatgaacctggcagtgtt--ttaattcag

upper sequence: Vv09s0002g08260.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA20G38450.1 (Glycine max), 5'ss of exon 5
ATTGATCTTGTTGGTGAGCCAGAAATTGCTTCATTGGTCCAGCGGATAAAGgttggtaccttg--cttcttgctt----ggatggctttcatttt--tcttattgtttcgttttg-gatgtgttggactgtggtgtggtacttttgctgaaagcag
| ||| || || |||||  |||| |||||||| |||||||||||||||| |||||||  |||   |||| |  |       |  | | | |||||  | |||||   |  ||||| | |   |  ||  ||||    ||  ||||  |  |     
ACTGACCTAGTAGGTGAATCAGACATTGCTTCTTTGGTCCAGCGGATAAGGgttggtgtctttgtcttcctattctatctaagagttattattttaattttatttcattattttgagctccatatgaacgtggct--gtgtttttaattcag----

upper sequence: Vv09s0002g08260.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT1G15730.1 (Arabidopsis thaliana), 5'ss of exon 5
ATTGATCTTGTTGGTGAGCCAGAAATTGCTTCATTGGTCCAGCGGATAAAGgttggtaccttgcttcttgcttggatggctttcatttttcttattgtttcgttttggatgtgttggactgtggtgtg-gtacttttgctgaaagcag
| |||||||||||||||||||||| | |||||| || | |||||||||||||| ||| |  ||||||||       |  ||||  | | | | |   | |  ||||   ||||     |  | |  |   |  | | | |     |||
ACTGATCTTGTTGGTGAGCCAGAACTAGCTTCAGTGATGCAGCGGATAAAGgtaggttc--tgcttcttctgattctttcttttttctctttgaacatctatttttctctgtgcactgcgttagcatttatgatgtggttatttccag