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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTTGCTGCCCTAATAGTTAGAAACAAGCTTTTTGTTGCTAATGCTGGTGATTGCAGGACAATCTTATGTCGAGCTGGCTGTGCTTTTGCTTTAAGTAAGgtgagcttagactgatttaatcagttaaatgcatatttgaatggtacctgagatcacaaggaccttacaatttgacttcaaattccgtctggctttcttagttaactataaggtggtgtattattcttccaataattgactatggattag

Basic information

species Vitis vinifera
transcript Vv08s0040g00760.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0040g00760.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: LOC_Os01g36080.4 (Oryza sativa), 5'ss of exon 8
AGTTGCTGCCCTAATAGTTAGAAACAAGCTTTTTGTTGCTAATGCTGGTGATTGCAGGACAATCTTATGTCGAGCTGGCTGTGCTTTTGCTTTAAGTAAGgtgagcttagactgatttaatcagttaaatgcatatttgaatggtacctgagatcacaaggaccttacaatttgacttcaaattccgtctggctttcttagttaactataaggtggtgtattattcttccaataattgactatggattag
|||  | || || ||||| ||||||||||||||||| || ||||||||||||||| || ||||  |    || |||||     | ||| || | |  | |||  || ||   |   ||  | | ||   ||||   ||        | ||| ||   ||| |  ||| ||  | |  |    || | |   || ||  |||                                                 
AGTGACAGCACTGATAGTGAGAAACAAGCTTTTTGTAGCGAATGCTGGTGATTGCCGGGCAATTCTGAACCGTGCTGGTGAACCATTTCCTATGACCAGGgtccgcataatatttcttctttattt---tgcacgctt--------cttgaaatt-taagca--ttataacataagatatgttttcattctgccttggtag-------------------------------------------------