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...aatgtaaatctctgtattgtaatctagaactatttgcagttaaagtatatatctgtcttcccctctataaatgtaaatctctggctccaacatattgcagTGAGCTACTTACTGGTGTTGTGCCATATACTGATCTTCGAGCAGAAGCTCAG
species | Vitis vinifera |
transcript | Vv08s0040g00760.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GAGATACATACTGAAAAATCAGATGTATACAGTTTTGGAGTATCAATTAA TGAGCTACTTACTGGTGTTGTGCCATATACTGATCTTCGAGCAGAAGCTCAEST: gi|351033000|gb|FQ461889.1|FQ461889
genomic: GAGATACATACTGAAAAATCAGATGTATACAGTTTTGGAGTATCAATTAAgtaagaatct ... catattgcagTGAGCTACTTACTGGTGTTGTGCCATATACTGATCTTCGAGCAGAAGCTCA
EST: GAGATACATACTGAAAAATCAGATGTATACAGTTTTGGAGTATCAATTAA TGAGCTACTTACTGGTGTTGTGCCATATACTGATCTTCGAGCAGAAGCTCAEST: gi|351051800|gb|FQ455214.1|FQ455214
genomic: GAGATACATACTGAAAAATCAGATGTATACAGTTTTGGAGTATCAATTAAgtaagaatct ... catattgcagTGAGCTACTTACTGGTGTTGTGCCATATACTGATCTTCGAGCAGAAGCTCA
EST: GAGATACATACTGAAAAATCAGATGTATACAGTTTTGGAGTATCAATTAA TGAGCTACTTACTGGTGTTGTGCCATATACTGATCTTCGAGCAGAAGCTCAEST: gi|349827660|gb|FQ422528.1|FQ422528
genomic: GAGATACATACTGAAAAATCAGATGTATACAGTTTTGGAGTATCAATTAAgtaagaatct ... catattgcagTGAGCTACTTACTGGTGTTGTGCCATATACTGATCTTCGAGCAGAAGCTCA
EST: GAGATACATACTGAAAAATCAGATGTATACAGTTTTGGAGTATCAATTAA TGAGCTACTTACTGGTGTTGTGCCATATACTGATCTTCGAGCAGAAGCTCAEST: gi|349829925|gb|FQ422238.1|FQ422238
genomic: GAGATACATACTGAAAAATCAGATGTATACAGTTTTGGAGTATCAATTAAgtaagaatct ... catattgcagTGAGCTACTTACTGGTGTTGTGCCATATACTGATCTTCGAGCAGAAGCTCA
EST: GAGATACATACTGAAAAATCAGATGTATACAGTTTTGGAGTATCAATTAA TGAGCTACTTACTGGTGTTGTGCCATATACTGATCTTCGAGCAGAAGCTCAEST: gi|351039168|gb|FQ457843.1|FQ457843
genomic: GAGATACATACTGAAAAATCAGATGTATACAGTTTTGGAGTATCAATTAAgtaagaatct ... catattgcagTGAGCTACTTACTGGTGTTGTGCCATATACTGATCTTCGAGCAGAAGCTCA
EST: GAGATACATACTGAAAAATCAGATGTATACAGTTTTGGAGTATCAATTAA TGAGCTACTTACTGGTGTTGTGCCATATACTGATCTTCGAGCAGAAGCTCAEST: gi|351025853|gb|FQ427865.1|FQ427865
genomic: GAGATACATACTGAAAAATCAGATGTATACAGTTTTGGAGTATCAATTAAgtaagaatct ... catattgcagTGAGCTACTTACTGGTGTTGTGCCATATACTGATCTTCGAGCAGAAGCTCA
EST: GAGATACATACTGAAAAATCAGATGTATACAGTTTTGGAGTATCAATTAA TGAGCTACTTACTGGTGTTGTGCCATATACTGATCTTCGAGCAGAAGCTCAEST: gi|351019117|gb|FQ429277.1|FQ429277
genomic: GAGATACATACTGAAAAATCAGATGTATACAGTTTTGGAGTATCAATTAAgtaagaatct ... catattgcagTGAGCTACTTACTGGTGTTGTGCCATATACTGATCTTCGAGCAGAAGCTCA
EST: GAGATACATACTGAAAAATCAGATGTATACAGTTTTGGAGTATCAATTAA TGAGCTACTTACTGGTGTTGTGCCATATACTGATCTTCGAGCAGAAGCTCAEST: gi|351038320|gb|FQ461012.1|FQ461012
genomic: GAGATACATACTGAAAAATCAGATGTATACAGTTTTGGAGTATCAATTAAgtaagaatct ... catattgcagTGAGCTACTTACTGGTGTTGTGCCATATACTGATCTTCGAGCAGAAGCTCA
EST: GAGATACATACTGAAAAATCAGATGTATACAGTTTTGGAGTATCAATTAA TGAGCTACTTACTGGTGTTGTGCCATATACTGATCTTCGAGCAGAAGCTCAEST: gi|352798467|gb|FQ480492.1|FQ480492
genomic: GAGATACATACTGAAAAATCAGATGTATACAGTTTTGGAGTATCAATTAAgtaagaatct ... catattgcagTGAGCTACTTACTGGTGTTGTGCCATATACTGATCTTCGAGCAGAAGCTCA
EST: GAGATACATACTGAAAAATCAGATGTATACAGTTTTGGAGTATCAATTAA TGAGCTACTTACTGGTGTTGTGCCATATACTGATCTTCGAGCAGAAGCTCAEST: gi|352790239|gb|FQ481438.1|FQ481438
genomic: GAGATACATACTGAAAAATCAGATGTATACAGTTTTGGAGTATCAATTAAgtaagaatct ... catattgcagTGAGCTACTTACTGGTGTTGTGCCATATACTGATCTTCGAGCAGAAGCTCA
EST: GAGATACATACTGAAAAATCAGATGTATACAGTTTTGGAGTATCAATTAA TGAGCTACTTACTGGTGTTGTGCCATATACTGATCTTCGAGCAGAAGCTCA
genomic: GAGATACATACTGAAAAATCAGATGTATACAGTTTTGGAGTATCAATTAAgtaagaatct ... catattgcagTGAGCTACTTACTGGTGTTGTGCCATATACTGATCTTCGAGCAGAAGCTCA
tatatatctgtcttcccctctataaatgtaaatctctggctccaacatattgcagTGAGCTACTTACTGGTGTTGTGCCATATACTGATCTTCGAGCAGAAGCTCAG
tctataaatgtaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatgtaaatctctgtattgtaatctagaactatttgcagttaaagtatatatctgtcttcccctctataaatgtaaatctctggctccaacatattgcagTGAGCTACTTACTGGTGTTGTGCCATATACTGATCTTCGAGCAGAAGCTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
aatgtaaa
- - - - -ctctgta
- - - - - - - - - - - - - - - - - tgcagtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctccaa