1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TGAGCTACTTACTGGTGTTGTGCCATATACTGATCTTCGAGCAGAAGCTCAGgtaagcattctttatttgcatgctgtttgttacttgttttgattaaaatgcacctatgtaaaggagttaaaaaaataaaaaagtggagctttttcataat...
species | Vitis vinifera |
transcript | Vv08s0040g00760.t01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AGCTACTTACTGGTGTTGTGCCATATACTGATCTTCGAGCAGAAGCTCAG GCCCACACTGTGCTCGAAATGAACTACACTGAACAGCAACTTACAGCAGCTEST: gi|351033000|gb|FQ461889.1|FQ461889
genomic: AGCTACTTACTGGTGTTGTGCCATATACTGATCTTCGAGCAGAAGCTCAGgtaagcattc ... ctgctggcagGCCCACACTGTGCTCGAAATGAACTACACTGAACAGCAACTTACAGCAGCT
EST: AGCTACTTACTGGTGTTGTGCCATATACTGATCTTCGAGCAGAAGCTCAG GCCCACACTGTGCTCGAAATGAACTACACTGAACAGCAACTTACAGCAGCTEST: gi|351051800|gb|FQ455214.1|FQ455214
genomic: AGCTACTTACTGGTGTTGTGCCATATACTGATCTTCGAGCAGAAGCTCAGgtaagcattc ... ctgctggcagGCCCACACTGTGCTCGAAATGAACTACACTGAACAGCAACTTACAGCAGCT
EST: AGCTACTTACTGGTGTTGTGCCATATACTGATCTTCGAGCAGAAGCTCAG GCCCACACTGTGCTCGAAATGAACTACACTGAACAGCAACTTACAGCAGCTEST: gi|349827660|gb|FQ422528.1|FQ422528
genomic: AGCTACTTACTGGTGTTGTGCCATATACTGATCTTCGAGCAGAAGCTCAGgtaagcattc ... ctgctggcagGCCCACACTGTGCTCGAAATGAACTACACTGAACAGCAACTTACAGCAGCT
EST: AGCTACTTACTGGTGTTGTGCCATATACTGATCTTCGAGCAGAAGCTCAG GCCCACACTGTGCTCGAAATGAACTACACTGAACAGCAACTTACAGCAGCTEST: gi|349829925|gb|FQ422238.1|FQ422238
genomic: AGCTACTTACTGGTGTTGTGCCATATACTGATCTTCGAGCAGAAGCTCAGgtaagcattc ... ctgctggcagGCCCACACTGTGCTCGAAATGAACTACACTGAACAGCAACTTACAGCAGCT
EST: AGCTACTTACTGGTGTTGTGCCATATACTGATCTTCGAGCAGAAGCTCAG GCCCACACTGTGCTCGAAATGAACTACACTGAACAGCAACTTACAGCAGCTEST: gi|351039168|gb|FQ457843.1|FQ457843
genomic: AGCTACTTACTGGTGTTGTGCCATATACTGATCTTCGAGCAGAAGCTCAGgtaagcattc ... ctgctggcagGCCCACACTGTGCTCGAAATGAACTACACTGAACAGCAACTTACAGCAGCT
EST: AGCTACTTACTGGTGTTGTGCCATATACTGATCTTCGAGCAGAAGCTCAG GCCCACACTGTGCTCGAAATGAACTACACTGAACAGCAACTTACAGCAGCTEST: gi|351025853|gb|FQ427865.1|FQ427865
genomic: AGCTACTTACTGGTGTTGTGCCATATACTGATCTTCGAGCAGAAGCTCAGgtaagcattc ... ctgctggcagGCCCACACTGTGCTCGAAATGAACTACACTGAACAGCAACTTACAGCAGCT
EST: AGCTACTTACTGGTGTTGTGCCATATACTGATCTTCGAGCAGAAGCTCAG GCCCACACTGTGCTCGAAATGAACTACACTGAACAGCAACTTACAGCAGCTEST: gi|351019117|gb|FQ429277.1|FQ429277
genomic: AGCTACTTACTGGTGTTGTGCCATATACTGATCTTCGAGCAGAAGCTCAGgtaagcattc ... ctgctggcagGCCCACACTGTGCTCGAAATGAACTACACTGAACAGCAACTTACAGCAGCT
EST: AGCTACTTACTGGTGTTGTGCCATATACTGATCTTCGAGCAGAAGCTCAG GCCCACACTGTGCTCGAAATGAACTACACTGAACAGCAACTTACAGCAGCTEST: gi|351038320|gb|FQ461012.1|FQ461012
genomic: AGCTACTTACTGGTGTTGTGCCATATACTGATCTTCGAGCAGAAGCTCAGgtaagcattc ... ctgctggcagGCCCACACTGTGCTCGAAATGAACTACACTGAACAGCAACTTACAGCAGCT
EST: AGCTACTTACTGGTGTTGTGCCATATACTGATCTTCGAGCAGAAGCTCAG GCCCACACTGTGCTCGAAATGAACTACACTGAACAGCAACTTACAGCAGCTEST: gi|352798467|gb|FQ480492.1|FQ480492
genomic: AGCTACTTACTGGTGTTGTGCCATATACTGATCTTCGAGCAGAAGCTCAGgtaagcattc ... ctgctggcagGCCCACACTGTGCTCGAAATGAACTACACTGAACAGCAACTTACAGCAGCT
EST: AGCTACTTACTGGTGTTGTGCCATATACTGATCTTCGAGCAGAAGCTCAG GCCCACACTGTGCTCGAAATGAACTACACTGAACAGCAACTTACAGCAGCTEST: gi|352790239|gb|FQ481438.1|FQ481438
genomic: AGCTACTTACTGGTGTTGTGCCATATACTGATCTTCGAGCAGAAGCTCAGgtaagcattc ... ctgctggcagGCCCACACTGTGCTCGAAATGAACTACACTGAACAGCAACTTACAGCAGCT
EST: AGCTACTTACTGGTGTTGTGCCATATACTGATCTTCGAGCAGAAGCTCAG GCCCACACTGTGCTCGAAATGAACTACACTGAACAGCAACTTACAGCAGCT
genomic: AGCTACTTACTGGTGTTGTGCCATATACTGATCTTCGAGCAGAAGCTCAGgtaagcattc ... ctgctggcagGCCCACACTGTGCTCGAAATGAACTACACTGAACAGCAACTTACAGCAGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAGCTACTTACTGGTGTTGTGCCATATACTGATCTTCGAGCAGAAGCTCAGgtaagcattctttatttgcatgctgtttgttacttgttttgattaaaatgcacctatgtaaaggagttaaaaaaataaaaaagtggagctttttcataat
- - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -attaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taaagga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaa