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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTATATGAAGCAGTTACTGACTGGGCTTCACTACTGTCACGTCAATCAAGTACTTCACAGGGACATCAAAGgttatcatcaaattgaattatttcttctattggatctgctccttaatttttgcaactagtgttacatccatgaacacctgtttcttgcag

Basic information

species Vitis vinifera
transcript Vv07s0141g00280.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0141g00280.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT5G64960.2 (Arabidopsis thaliana), 5'ss of exon 5
TGTTATATGAAGCAGTTACTGACTGGGCTTCACTACTGTCACGTCAATCAAGTACTTCACAGGGACATCAAAGgttatcatcaaattgaattatttcttctattggatctgctccttaatttttgcaactagtgttacatccatgaacacctgtttcttgcag
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TGTTACATGAAGCAACTGCTGACTGGGCTTCACTATTGTCATGTGAATCAAGTGCTTCACCGTGATATAAAAGgtgaatat-atcccaaaatacattgttgaccat-tttgttctcttgtctttat--ttgctagttaacctat-aatatat---tggtgcag