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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgatatgtctataatgcttagtaagatttttattttacttttgtggcgatgaaaattccttgatgatttaccgacaaactttcttttcagTGTTATATGAAGCAGTTACTGACTGGGCTTCACTACTGTCACGTCAATCAAGTACTTCACAGGGACATCAAAG

Basic information

species Vitis vinifera
transcript Vv07s0141g00280.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0141g00280.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT5G64960.2 (Arabidopsis thaliana), 3'ss of exon 4
gtgtgatatgtctataatgctta--gtaagatttttattttacttttgtggcgatgaaaattccttgatgatttaccgacaaactttcttttcagTGTTATATGAAGCAGTTACTGACTGGGCTTCACTACTGTCACGTCAATCAAGTACTTCACAGGGACATCAAAG
|| |   ||| ||| |   |||   |||  |   ||     |      |   | |   | ||  |     ||||    ||| |  |       ||||||| ||||||||  | ||||||||||||||||| ||||| || |||||||| |||||| | || || ||||
gtattgcatggctagacaccttgttgtagtagcctttgcaaaaacccttattgttccgactttgtctgacatttg--aacatatgtaaaaa--agTGTTACATGAAGCAACTGCTGACTGGGCTTCACTATTGTCATGTGAATCAAGTGCTTCACCGTGATATAAAAG

upper sequence: Vv07s0141g00280.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT5G10270.1 (Arabidopsis thaliana), 3'ss of exon 5
gtgtgatatgtctataatgcttagtaagatttttattttacttttgtggcgatgaaaattccttgatgatttaccgacaaactttcttttcagTGTTATATGAAGCAGTTACTGACTGGGCTTCACTACTGTCACGTCAATCAAGTACTTCACAGGGACATCAAAG
|| |   | | ||| |  |||   ||    || ||||   ||||| |     | |   |||     |  | || |    ||     ||   ||||||| |||||||| || || || ||||||||||| ||||| || |||||||| |||||| | || || ||||
gtattgcacggctaaatagctcgtta---cttctattagcctttt-tcatacttattgttcaactttattctaacactcaatccatttaaaagTGTTACATGAAGCAATTGCTTACCGGGCTTCACTATTGTCATGTGAATCAAGTGCTTCACCGTGATATAAAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacttttgtggcgatgaaaattccttgatgatttaccgacaaactttcttttcagTGTTATATGAAGCAGTTACTGACTGGGCTTCACTACTGTCACGTCAATCAAGTACTTCACAGGGACATCAAAG
                      ccttgat  putative branch site (score: 5)
                                           ctttcttttc  putative PPT
             atgaaaatt  TA-rich tract