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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATACAGAGGTGGCATCTACATGGTTTTTGATTACATGGACCATGATTTAGCAGGCCTGTCTGATCGTCCTGGACTGAGATTTTCAATTCCTCAGGTCAAGgtgtgatatgtctataatgcttagtaagatttttattttacttttgtggcgatgaaaattccttgatgatttaccgacaaactttcttttcag

Basic information

species Vitis vinifera
transcript Vv07s0141g00280.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0805g00020.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT5G10270.1 (Arabidopsis thaliana), 5'ss of exon 5
ATACAGAGGTGGCATCTACATGGTTTTTGATTACATGGACCATGATTTAGCAGGCCTGTCTGATCGTCCTGGACTGAGATTTTCAATTCCTCAGGTCAAGgtgtgatatgtctataatgcttagtaagatttttattttacttttgtggcgatgaaaattccttgatgatttaccgacaaactttcttttcag
|||||  ||||||||||||||||||||||| |||||||| ||||||||  | || ||  | ||||||||||||||||||||| |  |||||||  | ||||| |   | | ||| |  |||   ||    || ||||   ||||| |     | |   |||     |  | || |    ||     ||   ||
ATACAAGGGTGGCATCTACATGGTTTTTGAGTACATGGATCATGATTTGACTGGACTAGCAGATCGTCCTGGACTGAGATTTACTGTTCCTCAAATTAAGgtattgcacggctaaatagctcgtta---cttctattagcctttt-tcatacttattgttcaactttattctaacactcaatccatttaaaag

upper sequence: Vv00s0805g00020.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT5G64960.2 (Arabidopsis thaliana), 5'ss of exon 4
ATACAGAGGTGGCATCTACATGGTTTTTGATTACATGGACCATGATTTAGCAGGCCTGTCTGATCGTCCTGGACTGAGATTTTCAATTCCTCAGGTCAAGgtgtgatatgtctataatgctt-----agtaagattttta-----ttttacttttgtggcgatgaaaattccttgatgatttaccgacaaactttcttttcag
|||||  ||||| ||||||||||| ||||| |||||||| ||||| ||  | || ||  ||||||||||||||||||||||| |  |||||||| | ||||| |   ||| ||| |   |||     ||||   |||  |       ||| | ||  | |  ||        ||||  || |    | ||             
ATACAAGGGTGGAATCTACATGGTCTTTGAGTACATGGATCATGACTTGACTGGACTTGCTGATCGTCCTGGACTGAGATTTACGGTTCCTCAGATAAAGgtattgcatggctagacaccttgttgtagtagcctttgcaaaaacccttattgttccgactttgtctgacatttgaacatatgtaaaaaag------------