Sequence
atgc intronic sequence ATGC exonic sequenceGGACGGCATGCTCTGGTTTATGATATTAATACAACAAATGAAACGTGGGAATGGGTCAATCTAAAAGAGgtaattttgatgttgccttcctatatatgctcaatgattgtcttaaaaaaaataccacaatttttttgtttaaatttttattaactcatacagctatgaa...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g01350.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G049155_T03 (Zea mays), 5'ss of exon 6
GGACGGCATGCTCTGGTTTATGATATTAATACAACAAATGAAACGTGGGAATGGGTCAATCTAAAAGAGgtaattttgatgttgcct-tcctatatatgctcaatgattgtcttaaaaaaaataccacaatttttttgtttaaat---ttttattaactcatacagctatgaa---
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GGCCTTTATGTGCTGGTTTATGACATTAATACGGCAAATGAAACCTGGGAGTGGGTTGATCTTAAAGAGgtacatat-atgctatttataatgagaatgctt--tggtcactt----gacattttcatatcttcctttcctatattctttttgttttttaattcgacactggatgg
upper sequence: Vv06s0004g01350.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA18G02360.1 (Glycine max), 5'ss of exon 7
GGACGGCATGCTCTGGTTTATGATATTAATACAACAAATGAAACGTGGGAATGGGTCAATCTAAAAGAGgtaattttgatgttgccttcctatatatgctcaatgattgtcttaaaaaaaa----taccacaatttttttgtttaaatttttattaactcatacagctatgaa
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GGACTACATGCTTTGGTTTATGATATGAATTCAGCAAATGAAACATGGGAGTGGGTCAATCTTAAAGAGgtcaattttacaatattaatattcttctg-tctatcattcacatacaatctagttttagcgtcgttcattcttttcttttctttttaagcaacatttctct---
upper sequence: Vv06s0004g01350.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA20G39100.1 (Glycine max), 5'ss of exon 5
GGACGGCATGCTCTGGTTTATGATATTAATACAACAAATGAAACGTGGGAATGGGTCAATCTAAAAGAGgtaattttgatgttgccttcctatatatgc-tcaatgattgtcttaaaaaaaa----taccacaatttttttgtttaaatttttattaactcatacagctatgaa
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GGACTACATGCTTTGGTTTATGATATGAATTCAGCAAATGAAACATGGGAGTGGGTTAATCTTAAAGAGgtaaaattt-tacaatattaatattcttccgtctatcattcacatacaatctagttttagcttggttctttcttttcttttctttttaagcaatattttcc----
upper sequence: Vv06s0004g01350.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT5G13020.1 (Arabidopsis thaliana), 5'ss of exon 7
GGACGGCATGCTCTGGTTTATGATATTAATACAACAAATGAAACGTGGGAATGGGTCAATCTAAAAGAGgtaattttgatgttgccttcctatatatgctcaatgattgtcttaaa---aaaaataccacaatttttttgtttaaatttttattaactcatacagctatgaa
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GGGCGTCATGCTTTAGTGTATGATATTAACTCTGCGAATGAAACCTGGGAATGGGTAAATCTTAAAGAGgtaattatgatttcagtttttc-tacttgtctaatatatctttcacatttgtacagaagatgatgctatgtcgtaaaatttggagagaccatgt-gttgttt-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|34547339|gb|CF515571.1|CF515571EST: AATGAAACGTGGGAATGGGTCAATCTAAAAGAG ATATCCCCTGAAGATATTAGGTGGGAAGGTGATGAGTCTGGAATGTCTCGA
genomic: AATGAAACGTGGGAATGGGTCAATCTAAAAGAGgtaattttga ... ttaattgtagATATCCCCTGAAGATATTAGGTGGGAAGGTGATGAGTCTGGAATGTCTCGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGACGGCATGCTCTGGTTTATGATATTAATACAACAAATGAAACGTGGGAATGGGTCAATCTAAAAGAGgtaattttgatgttgccttcctatatatgctcaatgattgtcttaaaaaaaataccacaatttttttgtttaaatttttattaactcatacagctatgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaa