Sequence
atgc intronic sequence ATGC exonic sequencegtaatcttttacctctctttttcatattcatttgaagtaaatttttatcaaccatgtttatgaggtttaaatgcctttctggtaatttgtcttccagGAGAAGGAAAGTTTAATTACAGAACTTAGAAAAGAGTTGAGAGTATCAGATGAGGAACACAGGGAACTTCTATCGAGAGTTAATGCTGATGACATCATCA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g01350.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: LOC_Os04g56440.1 (Oryza sativa), 3'ss of exon 2
----------gtaatcttttacctctctttttcatattcatttgaagtaaatttttatcaaccatgtttatgaggtttaaatgcctttctggtaatttgtcttccagGAGAAGGAAAGTTTAATTACAGAACTTAGAAAAGAGTTGAGAGTATCAGATGAGGAACACAGGGAACTTCTATCGAGAGTTAATGCTGATGACATCATCA
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gtatgtatgtataaaaaaaagaatcttgtgctaacagtt-ttagtagccattctttgcacatgccttttttgtgttgagaataaaaaatgtatatttt-ttgtccagGAAAAAGAAAGTTTGATCACTGAACTCAGGAAAGAATTAAGAGTCTCTGATGATGAACACAGGGAACTATTAAACAAAGTTAATGAAGATGTGGCCATCC
upper sequence: Vv06s0004g01350.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA20G39100.1 (Glycine max), 3'ss of exon 1
gtaatcttttacctctctttttcatattcatttgaagtaaatttttatcaaccatgtttatgaggttta--aat--gcctttctggtaatttgtcttccagGAGAAGGAAAGTTTAATTACAGAACTTAGAAAAGAGTTGAGAGTATCAGATGAGGAACACAGGGAACTTCTATCGAGAGTTAATGCTGATGACATCATCA
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----------gtacctttgcctca-attcatt-ggtttgtctttctattaagtatgtcggataggattgccaatgagttcttttgttcctatgtactttagGAAAAAGAAAGTTTAATTACAGAGCTTAGGAAGGAGCTAAGAGTATCAGATGAAGAACACAGAGAACTTCTATCAAGAGTCAATGCTGATGACATCATCC
upper sequence: Vv06s0004g01350.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA10G44290.1 (Glycine max), 3'ss of exon 1
gtaatcttttacctctctttttcatattcatttgaagtaaatttttatcaaccatgtttatgaggtttaa--atg--cctttctggtaatttgtcttccagGAGAAGGAAAGTTTAATTACAGAACTTAGAAAAGAGTTGAGAGTATCAGATGAGGAACACAGGGAACTTCTATCGAGAGTTAATGCTGATGACATCATCA
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----------gtacttttgcctca-attcatt-gatttgtctttctattaagtatgttggataggattgacaatgattttttttgttcctatgtactttagGAAAAAGAAAGTTTAATTACAGAGCTTAGGAAGGAGCTAAGAGTATCAGATGAAGAACACAGAGAACTTCTATCAAGAGTCAATGCCGATGACATCATCC
upper sequence: Vv06s0004g01350.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA18G02360.1 (Glycine max), 3'ss of exon 1
------------------------------gtaatcttttacctctctttttcatattcatttgaagtaaatttttatcaaccatgtttatgaggttta-aatg--cctttctggtaatttgtcttccagGAGAAGGAAAGTTTAATTACAGAACTTAGAAAAGAGTTGAGAGTATCAGATGAGGAACACAGGGAACTTCTATCGAGAGTTAATGCTGATGACATCATCA
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gtcctgaaggcttttaaagctcaatctgatgcaatcacttgggcacctttgccttaattcattggtttgtctttctattaagtatgtcgataggattggcaatgagtttttttgttcctatgtactttagGAAAAAGAAAGTTTAATTACAGAGCTTAGGAAGGAGCTAAGAGTATCAGATGAAGAACACAG--AACTTCTATCAAGA---------------------- atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttttatcaaccatgtttatgaggtttaaatgcctttctggtaatttgtcttccagGAGAAGGAAAGTTTAATTACAGAACTTAGAAAAGAGTTGAGAGTATCAGATGAGGAACACAGGGAACTTCTATCGAGAGTTAATGCTGATGACATCATCA
tttgtcttcc CT-rich tract
tttaaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaatcttttacctctctttttcatattcatttgaagtaaatttttatcaaccatgtttatgaggtttaaatgcctttctggtaatttgtcttccagGAGAAGGAAAGTTTAATTACAGAACTTAGAAAAGAGTTGAGAGTATCAGATGAGGAACACAGGGAACTTCTATCGAGAGTTAATGCTGATGACATCATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT