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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACAACCTATGATCCATTAATTGGAAAGAAGGTATGGACAAGGTGGCCTGAAGACAACCACTTCTATGAGGCTGTGATTACTGACTACAATCCTGTTGAGgtatattttactttttgactacataatgtgccagtacatatgaggcttcttcttaacctcgctattttgaaaaatttccag

Basic information

species Vitis vinifera
transcript Vv06s0004g01350.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g01350.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G041633_T01 (Zea mays), 5'ss of exon 6
TACAACCTATGATCCATTAATTGGAAAGAAGGTATGGACAAGGTGGCCTGAAGACAACCACTTCTATGAGGCTGTGATTACTGACTACAATCCTGTTGAGgtatattttactttttg--actacataatgtgccagtacatatgag-gcttcttcttaacctcgctattttgaaaaatttccag
|           | || ||||     | || || |  ||||||||||| ||||||||| |||||||||||||    || ||    || || |||||   ||| | ||| | ||||||  |||   |        | | ||  |  |      | |  |    |  | |||       | || ||
TGTGGATCCAAGTTCACTAATAAACCATAAAGTTTATACAAGGTGGCCAGAAGACAACAACTTCTATGAGGCCACCATAACACGATATAACCCTGTGACGgtttgtttcaatttttgctactgttttgatccttaatgcaggtatgcatcagtgcccagtaaccttctttcatgttctctctag

upper sequence: Vv06s0004g01350.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G103902_T03 (Zea mays), 5'ss of exon 6
TACAACCTATGATCCATTAATTGGAAAGAAGGTATGGACAAGGTGGCCTGAAGACAACCACTTCTATGAGGCTGTGATTACTGACTACAATCCTGTTGAGgtatattttactttttg--actacataatgtgcca-gtacatatgaggcttcttcttaacctcgctattttgaaaaatttccag
|           | | |||||     | || || |  ||||||||||| ||||||||| |||||||||||||    || ||  | || ||| ||||   |||   ||| | ||||||  |||      |     | | |||||||   |   | |  |       | |||    |  | |  ||
TGTGGATCCAAGTTCGTTAATAAACCATAAAGTTTATACAAGGTGGCCAGAAGACAACAACTTCTATGAGGCCACCATAACAAAATATAATGCTGTGACGgttggtttcaatttttgctactgttcgctccttgatgcacatatgcatcag-tgcccagtaatcttctttcatgatctctttag

upper sequence: Vv06s0004g01350.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA10G44290.1 (Glycine max), 5'ss of exon 4
---------------------------------------------------------------------TACAACCTATGATCCATTAATTGGAAAGAAGGTATGGACAAGGTGGCCTGAAGACAACCACTTCTATGAGGCTGTGATTACTGACTACAATCCTGTTGAGgtatattttactttttgactacataatgtgccagtacatatgaggcttcttcttaacctcgctattttgaaaaatttccag
                                                                       |  | |||||||| | ||||||||  || || ||||||||||||||||||||||||||||||||||| ||||| || || || || ||| ||| ||||                                                                                 
AAGCTGAAGCCTGGTCACTAATCAGGGGGGTTCTTCAGGTGGCTTTGCAGCAAAAGGACCTGCTGAAGCAGCTTCTTATGATCCCTGAATTGGAAGCAAAgtttggacaaggtggcctgaagacaaccacttctatgaagctgttataacggattataatgctgctgag---------------------------------------------------------------------------------

upper sequence: Vv06s0004g01350.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA20G39100.1 (Glycine max), 5'ss of exon 4
TACAACCTATGATCCATTAATTGGAAAGAAGGTATGGACAAGGTGGCCTGAAGACAACCACTTCTATGAGGCTGTGATTACTGACTACAATCCTGTTGAGgtatattt-tactttttgactacataatgtgccagtacatatgaggcttcttcttaacctcgctattttgaaaaatttccag
  |  | |||||||| |  ||||||| ||| || ||||||||||||||||||||||||||||||||||| ||||| || || || || ||| ||| |||||| | ||| || | |   | || | | || |  | |||||    | || |||  |||  |  ||||||   | | |||  ||
AGCTTCTTATGATCCCTGGATTGGAAGGAAAGTTTGGACAAGGTGGCCTGAAGACAACCACTTCTATGAAGCTGTTATAACGGATTATAATGCTGCTGAGgtgtgtttatagtatactattagaaactgagg-aatacatg---gactcctt--taatatttctattt-acatattttgtag

upper sequence: Vv06s0004g01350.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA18G02360.1 (Glycine max), 5'ss of exon 5
---------------------------TACAACCTATGATCCATTAATTGGAAAGAAGGTATGGACAAGGTGGCCTGAAGACAACCACTTCTATGAGGCTGTGATTACTGACTACAATCCTGTTGAGgtatattttactttttgactacataatgtgccagtacatatg-aggcttcttcttaacctcgctattttgaaaaatttccag
                             |  | |||||||| |  ||||||| ||| || ||||||||||||||||||||| ||||||||||||| ||||| || || || || |||      ||        | |     |  | | | ||  | | |  | |  || ||||         |       |  | | || |       
CTTTGCAGCAAAAGGACCTGCTGAAGGAGCTTCTTATGATCCCTGGATTGGAAGGAAAGTTTGGACAAGGTGGCCTGAAGACCACCACTTCTATGAAGCTgttataacggattataattgatacgaaaagaggatcatcagctagcaa-agaacat-caaacagaggtgcaggcacagaacagaggggttcagatagcaaga-------

upper sequence: Vv06s0004g01350.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT5G13020.1 (Arabidopsis thaliana), 5'ss of exon 6
TACAACCTATGATCCATTAATTGGAAAGAAGGTATGGACAAGGTGGCCTGAAGACAACCACTTCTATGAGGCTGTGATTACTGACTACAATCCTGTTGAGgtatattttactttttgactacata---atgtgccagtac---atatgaggcttct----tcttaacctcgctattttgaaaaatttccag
   | | ||||| || ||  |||||| |||||||||||| | ||||||||| |||||||| | ||| || ||||| || ||||||||||| ||||||||||||| || |  ||  |  ||| |||    |||   ||| |   || |  |  ||||    || |    |  || |||| || | |    ||
GGGATCATATGACCCGTTGGTTGGAAGGAAGGTATGGACGAAGTGGCCTGATGACAACCAATACTACGAAGCTGTTATAACTGACTACAACCCTGTTGAGgtatcttatctttcattgctatatattagtgttttagtgccaaatctccgttttctgatatcatttatttccttttttcaacattgattag