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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAATGCATGCTTGTATAGTTACTCTGATACTAAGgtatgcatgaaatccttttgttaccattcgactagccatcttaggcttacagtttcttttggctccttcctgatcctaggtttttttttttttttttcttttgtggaacag

Basic information

species Vitis vinifera
transcript Vv05s0062g01250.t01
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110383722|gb|EC948114.1|EC948114
EST:     GGAATGCATGCTTGTATAGTTAACTCTGATACTAAG                         AGGATGCAAAAATAGTGAGCGGAAGACCGTGAATTTGCCTCTTAAAGGAGA
genomic: GGAATGCATGCTTGTATAGTTA-CTCTGATACTAAGgtatgcatga ... tgtggaacagAGGATGCAAAAATAGTGAGCGGAAGACCGTGAATTTGCCTCTTTTTGGAGA
EST: gi|110688633|gb|EE067409.1|EE067409
EST:     TGCTTGTATAGTTACTCTGATACTAAG                         AGGATGCAAAAATAGTGAGCGGAAGACCGTGAATTTGCCTCTTTTTGGAGA
genomic: TGCTTGTATAGTTACTCTGATACTAAGgtatgcatga ... tgtggaacagAGGATGCAAAAATAGTGAGCGGAAGACCGTGAATTTGCCTCTTTTTGGAGA
EST: gi|294965259|gb|GW838946.1|GW838946
EST:     GGAATGCATGCTTGTATAGTTACTCTGATACTAAG                         AGGATGCAAAAATAGTGAGCGGAAGACCGTGAATTTGCCTCTTTTTGGAGA
genomic: GGAATGCATGCTTGTATAGTTACTCTGATACTAAGgtatgcatga ... tgtggaacagAGGATGCAAAAATAGTGAGCGGAAGACCGTGAATTTGCCTCTTTTTGGAGA
EST: gi|110731688|gb|EE106318.1|EE106318
EST:     GGAATGCATGCTTGTATAGTTACTCTGATACTAAG                         AGGATGCAAAAATAGTGAGCGGAAGACCGTGAATTTGCCTCTTTTTGGAGA
genomic: GGAATGCATGCTTGTATAGTTACTCTGATACTAAGgtatgcatga ... tgtggaacagAGGATGCAAAAATAGTGAGCGGAAGACCGTGAATTTGCCTCTTTTTGGAGA
EST: gi|110687402|gb|EE064779.1|EE064779
EST:     GGAATGCATGCTTGTATAGTTACTCTGATACTAAG                         AGGATGCAAAAATAGTGAGCGGAAGACCGTGAATTTGCCTCTTTTTGGAGA
genomic: GGAATGCATGCTTGTATAGTTACTCTGATACTAAGgtatgcatga ... tgtggaacagAGGATGCAAAAATAGTGAGCGGAAGACCGTGAATTTGCCTCTTTTTGGAGA