1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GTTGCTTCTGTACTTCTTTGTTGTGCATTTGTTTATGACATCTTCTGGGTCTTCATATCACCAGTAATATTCAAAGACAGTGTTATGATAGCAgtaagtctttatacaacatgctacttcttgtttacatctttgtgtatgtattatattgaaagtacacttcaaactacatgaaatatctgttttgacatga...
species | Vitis vinifera |
transcript | Vv05s0062g01250.t01 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: TCTGGGTCTTCATATCACCAGTAATATTCAAAGACAGTGTTATGATAGCA GTTGCTCGTGGTGACAACAGTGGTGGAGAATCCATTCCCATGCTGTTGAGAEST: gi|110731688|gb|EE106318.1|EE106318
genomic: TCTGGGTCTTCATATCACCAGTAATATTCAAAGACAGTGTTATGATAGCAgtaagtcttt ... gtgctgatagGTTGCTCGTGGTGACAACAGTGGTGGAGAATCCATTCCCATGCTGTTGAGA
EST: TCTGGGTCTTCATATCACCAGTAATATTCAAAGACAGTGTTATGATAGCA GTTGCTCGTGGTGACAACAGTGGTGGAGAATCCATTCCCATGCTGTTGAGAEST: gi|110687402|gb|EE064779.1|EE064779
genomic: TCTGGGTCTTCATATCACCAGTAATATTCAAAGACAGTGTTATGATAGCAgtaagtcttt ... gtgctgatagGTTGCTCGTGGTGACAACAGTGGTGGAGAATCCATTCCCATGCTGTTGAGA
EST: TCTGGGTCTTCATATCACCAGTAATATTCAAAGACAGTGTTATGATAGCA GTTGCTCGTGGTGACAACAGTGGTGGAGAATCCATTCCCATGCTGTTGAGAEST: gi|110395316|gb|EC960974.1|EC960974
genomic: TCTGGGTCTTCATATCACCAGTAATATTCAAAGACAGTGTTATGATAGCAgtaagtcttt ... gtgctgatagGTTGCTCGTGGTGACAACAGTGGTGGAGAATCCATTCCCATGCTGTTGAGA
EST: TCTGGGTCTTCATATCACCAGTAATATTCAAAGACAGTGTTATGATAGCA GTTGCTCGTGGTGACAACAGTGGTGGAGAATCCATTCCCATGCTGTTGAGA
genomic: TCTGGGTCTTCATATCACCAGTAATATTCAAAGACAGTGTTATGATAGCAgtaagtcttt ... gtgctgatagGTTGCTCGTGGTGACAACAGTGGTGGAGAATCCATTCCCATGCTGTTGAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGCTTCTGTACTTCTTTGTTGTGCATTTGTTTATGACATCTTCTGGGTCTTCATATCACCAGTAATATTCAAAGACAGTGTTATGATAGCAgtaagtctttatacaacatgctacttcttgtttacatctttgtgtatgtattatattgaaagtacacttcaaactacatgaaatatctgttttgacatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - attgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgaaa