Sequence
atgc intronic sequence ATGC exonic sequencegtgcttgtatcattctctcttatgtaacacatcgctattgctgtcattgtctaagtccttcaatcatattggaagtttttatagatttagtagatttattttattgttttccaccttatggctgcagTTAGAGCTCTTTTTAAGTTCTGGAACAGTTTGTTTATCCATCTATTCTTTGGTGGCTGGAATATTTGGCATGAATATTCCCTATACTTGGAATGATGATC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0020g04720.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA20G35260.1 (Glycine max), 3'ss of exon 9
gtgcttgtatcattctctcttatg-taacacatcgctattgctgtcattgtctaagtccttcaatcatattgga-agtttttatagatttagtagatttattttattgttttccaccttatggctgcagTTAGAGCTCTTTTTAAGTTCTGGAACAGTTTGTTTATCCATCTATTCTTTGGTGGCTGGAATATTTGGCATGAATATTCCCTATACTTGGAATGATGATC
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---------------------gtgctttcacgtttctgcaccttgcatgttgcatgtcatctatcagtattctataatgtattttttttttacgagttcgcttaatggtcttcaactct-tg--tgcagTTAGAGCTCTTTCTTAGCTCTGGAACTGTTTGTCTATCTTTCTACTCTTTGGTGGCGGCTATATTTGGCATGAATATCCCATATACTTGGAACGAAAACC
upper sequence: Vv05s0020g04720.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA10G32350.1 (Glycine max), 3'ss of exon 9
gtgcttgtatcattctctcttatgtaacacatcgctattgctgtcattgtctaagtccttcaatcatatt--ggaagtttttatagatttagtagatttattttattgttttccaccttatggctgcagTTAGAGCTCTTTTTAAGTTCTGGAACAGTTTGTTTATCCATCTATTCTTTGGTGGCTGGAATATTTGGCATGAATATTCCCTATACTTGGAATGATGATC
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--------------gtgcctttt----cacgtttctgcacctggcatgttgcatgtcatctatcggtattctataatgttttttttttttcacaagttcgctaaatggtcttcaactct-tg--tgcagTTGGAGCTCTTTCTTAGCTCAGGAACTGTTTGTCTATCTTTCTACTCTTTGGTGGCTGCTATATTTGGCATGAATATCCCATATACTTGGAACGATAACC
upper sequence: Vv05s0020g04720.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: AT5G64560.2 (Arabidopsis thaliana), 3'ss of exon 10
gtgcttgtatcattctctcttatgtaacacatcgctattgctgtcattgtctaagtccttcaatc---atattggaagtttttatagatttagtagatttattttattgttttccaccttatggctgcagTTAGAGCTCTTTTTAAGTTCTGGAACAGTTTGTTTATCCATCTATTCTTTGGTGGCTGGAATATTTGGCATGAATATTCCCTATACTTGGAATGATGATC
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------------------------------------------------------gtacgtgaatgtcgaaagccaaagtttttttaatat--gtcatcttcttttgttgatcatcttcaaaatcctgcagTTGGAGCTAGTGTTAAGTTCTGGAACAGTTTGCTTATCGATGTACTCTCTTGTCGCTGGAATTTTCGGGATGAACATTCCATACACATGGAACGACGGTCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71861547|gb|DT010602.1|DT010602EST: GAAATCAGTTGATTCAG TTAGAGCTCTTTTTAAGTTCTGGAACAGTTTGTTTATCCATCTATTCTTTG
genomic: GAAATCAGTTGATTCAGgtgcttgtat ... atggctgcagTTAGAGCTCTTTTTAAGTTCTGGAACAGTTTGTTTATCCATCTATTCTTTG
EST:
gi|77588493|gb|DV223461.1|DV223461EST: CTTGACAATCATCGAAATCAGTTGATTCAG TTAGAGCTCTTTTTAAGTTCTGGAACAGTTTGTTTATCCATCTATTCTTTG
genomic: CTTGACAATCATCGAAATCAGTTGATTCAGgtgcttgtat ... atggctgcagTTAGAGCTCTTTTTAAGTTCTGGAACAGTTTGTTTATCCATCTATTCTTTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aagtttttatagatttagtagatttattttattgttttccaccttatggctgcagTTAGAGCTCTTTTTAAGTTCTGGAACAGTTTGTTTATCCATCTATTCTTTGGTGGCTGGAATATTTGGCATGAATATTCCCTATACTTGGAATGATGATC
tttatagatttagtag TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgcttgtatcattctctcttatgtaacacatcgctattgctgtcattgtctaagtccttcaatcatattggaagtttttatagatttagtagatttattttattgttttccaccttatggctgcagTTAGAGCTCTTTTTAAGTTCTGGAACAGTTTGTTTATCCATCTATTCTTTGGTGGCTGGAATATTTGGCATGAATATTCCCTATACTTGGAATGATGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA