Sequence
atgc intronic sequence ATGC exonic sequence...acattttccatcagcagcagttgatcaattatctgctcaatttgtatgcttcacagccttaacactaaagacttcatatggtgctcataactgattgcagGTGAGGGATGAGCTTGAACAACTTCTGGATGATGATGATGATATGGCTGATCTTTATCTGTCCAGAAAATTGGCTGGTGCATCTTCACCAGTTAGCGGCT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0020g04720.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: LOC_Os03g53110.1 (Oryza sativa), 3'ss of exon 5
------acattttccatcagcagcagttgatcaattatctgctcaatttgtatgcttcacagccttaacactaaagacttcatatggtgctcataactgattgcagGTGAGGGATGAGCTTGAACAACTTCTGGATGATGATGATGATATGGCTGATCTTTATCTGTCCAGAAAATTGGCTGGTGCATCTTCACCAGTTAGCGGCT
|| | | | | | | |||| | || ||| || |||| || || | || | ||| | || | | | |||||||| ||||| ||||||||| | |||| ||||| ||||| |||||||||||||| |||||||||| |||||||| ||| |||| || || || ||||
tctattctcttgcatacttggtgtgtatcacccgttatttactagcttttcttg-ttcat-gctttcctattaga----tcacaaaatgtttgttctctttgccagGTGAGAGATGAACTTGAACAATTATTGGACGATGACGATGACATGGCTGATCTTTACTTGTCCAGAAAGTTGGCTGGGGCAGCTTCCCCTGTCAGTGGCT
upper sequence: Vv05s0020g04720.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GRMZM2G159295_T01 (Zea mays), 3'ss of exon 5
--acattttccatcagcagcagt--tgatcaattatctgctcaatttgtatgcttcacagccttaacactaaagacttcatatggtgctcataactgattgc-agGTGAGGGATGAGCTTGAACAACTTCTGGATGATGATGATGATATGGCTGATCTTTATCTGTCCAGAAAATTGGCTGGTGCATCTTCACCAGTTAGCGGCT
|||| || || | | || | ||| | | | | | || ||| | || ||| | || || ||| |||| ||||||| ||||||||||||||| | ||||||| || ||||| ||||||||||||||| |||| ||||| |||||||| |||||||| || || || || |
ttttatttcatgacattagtattcttggtgaatagt--gatagactactagcaccgtttctcttcgtggtttaggaatcacaaactgttct---ctgtttgccagGTGAGAGATGAGCTTGAACAATTATTGGATGACGACGATGACATGGCTGATCTTTATTTGTCTAGAAAGTTGGCTGGGGCATCTTCCCCTGTCAGTGGTT
upper sequence: Vv05s0020g04720.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA10G32350.1 (Glycine max), 3'ss of exon 5
------acattttccatcagcagcagttgatcaattatctgctcaatttgtatgcttcacagccttaacactaaagacttcatatggtgctcataactgattgcagGTGAGGGATGAGCTTGAACAACTTCTGGATGATGATGATGATATGGCTGATCTTTATCTGTCCAGAAAATTGGCTGGTGCATCTTCACCAGTTAGCGGCT---
| | | | | | || ||||||| || | | || | | | |||| | | ||| | | | | || ||| | ||||| || ||||||||||||||| | |||||||||||||||||||||||||| || || ||||| ||||| ||||||| || | ||||||||||| || |
tagtttaatgtgactgtaaactgcc-ttgatcagttttaagtagaaa----acaacatatatcctttgtccctctcccatcacaagttcttgttatctggt-acagGTCAGAGATGAGCTTGAACAATTGCTGGATGATGATGATGATATGGCTGACCTATACCTGTCAAGAAA---GGCTGGTTCAGCATCACCAGTTAGTGGATCAG
upper sequence: Vv05s0020g04720.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA20G35260.2 (Glycine max), 3'ss of exon 5
acattttccatcagcagcagttga-tcaattatctgctcaatttgtatgcttcacagccttaacactaaagacttcatatggtgctcataactgattgcagGTGAGGGATGAGCTTGAACAACTTCTGGATGATGATGATGATATGGCTGATCTTTATCTGTCCAGAAAATTGGCTGGTGCATCTTCACCAGTTAGCGGCT---
| ||| | | | || | || | | | | | | || | | | ||| | | | | || ||| | ||||| || ||||||||||||||| | |||||||||||||||||||||||||| || || ||||| ||||| ||||||| || | ||||||||||| || |
aagtttaatgtgaatgtaaactgccttgatcagttttaaatagaaaacaacatatatccattttccctctcccatcacaagttcttgttatctggt-acagGTCAGAGATGAGCTTGAACAATTGCTGGATGATGATGATGATATGGCTGACCTGTACCTGTCAAGAAA---GGCTGGTTCAGCATCACCAGTTAGTGGATCAG
upper sequence: Vv05s0020g04720.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT5G09690.1 (Arabidopsis thaliana), 3'ss of exon 5
---------------------------------------------------acattttccatcagca-gcagttgat---caattatctgctcaatttgtatgcttcacagcctt--aacactaaagacttcatatggtgctcataactgattgcagGTGAGGGATGAGCTTGAACAACTTCTGGATGATGATGATGATATGGCTGATCTTTATCTGTCCAGAAAATTGGCTGGTGCATCTTCACCAGTTAGCGGCT
|||| | | || || | | || | || | || | || | | | | || | |||| |||| || || | | | || ||||| ||||||||||||||||| | |||||||||||| ||||||||||||||| || || | || || | | ||||||||||||| | || |||| |
gtgagtatgtttcactggtaaacagagtctatgtttagaacttgtgttgccacatatactatgagtatgaagcttcctcacatatgtcaagtgaacattcaagatatacgatagtggaacagagaagaattaatctctctcgtcgcttttttttcagGTAAGGGATGAGCTTGAACAGTTGTTGGATGATGATGGTGATATGGCTGATCTCTACCTTACAAGGAAGCTTGTTGGTGCATCTTCATCTGTCAGCGTTT
upper sequence: Vv05s0020g04720.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT5G64560.1 (Arabidopsis thaliana), 3'ss of exon 6
acattttccatcagcagcagttgatcaattat--ctgctca--atttgtatgcttcacagccttaacactaaagacttcatatggtgctcataactgattgcagGTGAGGGATGAGCTTGAACAACTTCTGGATGATGATGATGATATGGCTGATCTTTATCTGTCCAGAAAATTGGCTGGTGCATCTTCACCAGTTAGCGGCT
| ||||| | | |||| || | | ||||||| || | | || | | ||| | | | |||| | |||||||| || ||||| || ||||| | ||||||||||| ||||||||||| |||||||| || || || ||| | | |||| || ||||| |||| |
---------gtgagcaggtatctttttcttatgacttatgagtatttgtaaagtttgtaatatgaata--gagaact--aagtagc-ttcatcgccttttgcagGTAAGAGATGAACTCGAACAGTTGCTGGATGATGACGATGATATGGCAGATCTTTACCTTTCAAGGAAACTTTCAAGTGCTTCCTCACCGATTAGTAGTA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atgcttcacagccttaacactaaagacttcatatggtgctcataactgattgcagGTGAGGGATGAGCTTGAACAACTTCTGGATGATGATGATGATATGGCTGATCTTTATCTGTCCAGAAAATTGGCTGGTGCATCTTCACCAGTTAGCGGCT
ttcatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
acattttccatcagcagcagttgatcaattatctgctcaatttgtatgcttcacagccttaacactaaagacttcatatggtgctcataactgattgcagGTGAGGGATGAGCTTGAACAACTTCTGGATGATGATGATGATATGGCTGATCTTTATCTGTCCAGAAAATTGGCTGGTGCATCTTCACCAGTTAGCGGCT
- - - - catcagc
- - - - - - - - - - - - - - - -tctgctc
- - - - - - - - - - - - - - - - - - - - - -gtatgct
- - - - - - - - - - - - - - - - - - - - - - - - - -cacagcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cactaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctcata