Sequence
atgc intronic sequence ATGC exonic sequenceCCCCACTATTGGCTCAAAAATCTCCAGGGTGAGTAGAGCAAGTGTGGCTACAGTTCGTGGAGATGAGAATGACGTTGAGGAGCTTGAAATGTTACTTGAGgttataacattcatatcagtcttgtttgtcatgttttattgacagttaagaagttatcatctaaagtgtgtagtgaaatgtcatgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0020g04720.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA20G35260.2 (Glycine max), 5'ss of exon 6
CCCCACTATTGGCTCAAAAATCTCCAGGGTGAGTAGAGCAAGTGTGGCTACAGTTCGTGGAGATGAGAATGACGTTGAGGAGCTTGAAATGTTACTTGAGgttat-aacattcatatcagtcttgtttg-----------tcatgttttattgacagttaagaagttatcatctaaagtgtgtagtgaaatgtcatgcag
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CCCCACCATAGGATCAAAGATATCTAGAGCAAGTAGAGCAAGTTTAGCAACAGTTCGTTTAGATGAAAATGATGTGGAAGAGCTTGAAATGTTACTTGAGgttattaacattatttgctttaaagaatagaaggaaaagatcttcatttttttatgaggaaaaaattgctataaatggtgtttgttca----ttttgcag
upper sequence: Vv05s0020g04720.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA10G32350.1 (Glycine max), 5'ss of exon 6
CCCCACTATTGGCTCAAAAATCTCCAGGGTGAGTAGAGCAAGTGTGGCTACAGTTCGTGGAGATGAGAATGACGTTGAGGAGCTTGAAATGTTACTTGAGgttataacattcatatcagtcttgtttgt--------catgttt-tattgacagttaagaagttatcatctaaagtgtgtagtgaaatgtcatgcag
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TGCTGCCTCTCCTACCATAGGATCAAAGATATCTAGAGCAAGTTTAGCAACAGTTCGTTTAGAAGAAAATGATGTGGAAGAGCTTGAAATGTTACTCGAGgttataaactttatttgctttaaaaatagaaggaaagcatcttcatttttttaatgaggaaaaaatgctataaaaggtct--ttgttcattttgcag
upper sequence: Vv05s0020g04720.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT5G64560.1 (Arabidopsis thaliana), 5'ss of exon 7
CCCCACTATTGGCTCAAAAATCTCCAGGGTGAGTAGAGCAAGTGTGGCTACAGTTCGTGGAGATGAGAATGACGTTGAGGAGCTTGAAATGTTACTTGAGgttataacattcatatcag----tcttgtttg-tcatgttttattgacagttaagaagttatcatctaaagtgtgtagtgaaatgtcat-gcag
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CCCAACAATAGGCTCTAAGATTTCAAGAGCAAGTAGAGCGAGTTTAGCCACAGTTCATGGGGATGAGAATGATGTTGAAGAACTTGAAATGTTACTCGAGgtttgttgatcctgcacaaaatcttttatctgattctgatctatcttccattcaaatgccaagtccaaatacacacgtcttgatatctttacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|77588493|gb|DV223461.1|DV223461EST: CAGTTCGTGGAGATGAGAATGACGTTGAGGAGCTTGAAATGTTACTTGAG GCTTACTTTATGCAAATTGATGGCACATTGAACAAATTAACTACG
genomic: CAGTTCGTGGAGATGAGAATGACGTTGAGGAGCTTGAAATGTTACTTGAGgttataacat ... tgtcatgcagGCTTACTTTATGCAAATTGATGGCACATTGAACAAATTAACTACG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CCCCACTATTGGCTCAAAAATCTCCAGGGTGAGTAGAGCAAGTGTGGCTACAGTTCGTGGAGATGAGAATGACGTTGAGGAGCTTGAAATGTTACTTGAGgttataacattcatatcagtcttgtttgtcatgttttattgacagttaagaagttatcatctaaagtgtgtagtgaaatgtcatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT