1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtatgcaggttctaccaatacatttttttccatggattttagcttgaatccaagtttttgtgtttaacaaatacctggtgtttcattgcagCAATTAGTGGTTAAGGCTGTCTCTCTTGCCATTGCTCGTGATGGAGCTAGCGGTGGTGTCATCCGCACTGTCATT
species | Vitis vinifera |
transcript | Vv04s0008g02850.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GATTTTTCGACCAAGCATGGAAAGAGGGAATGACGAAGGATGAAGCTGAG CAATTAGTGGTTAAGGCTGTCTCTCTTGCCATTGCTCGTGATGGAGCTAGTEST: gi|110364685|gb|EC928117.1|EC928117
genomic: GATTTTTTGACCAAGCATGGAAAGAGGGAATGACTAAGGATGAAGCTGAGgtatgcaggt ... ttcattgcagCAATTAGTGGTTAAGGCTGTCTCTCTTGCCATTGCTCGTGATGGAGCTAGC
EST: GATTTTTTGACCAAGCATGGAAAGAGGGAATGACGAAGGATGAAGCTGAG CAATTAGTGGTTAAGGCTGTCTCTCTTGCCATTGCTCGTGATGGAGCTAGTEST: gi|30255645|gb|CB971777.1|CB971777
genomic: GATTTTTTGACCAAGCATGGAAAGAGGGAATGACTAAGGATGAAGCTGAGgtatgcaggt ... ttcattgcagCAATTAGTGGTTAAGGCTGTCTCTCTTGCCATTGCTCGTGATGGAGCTAGC
EST: GATTTTTCGACCAAGCATGGAAAGAGGGAATGACGAAGGATGAAGCTGAG CAATTAGTGGTTAAGGCTGTCTCTCTTGCCATTGCTCGTGATGGAGCTAGTEST: gi|32457706|gb|CD798880.1|CD798880
genomic: GATTTTTTGACCAAGCATGGAAAGAGGGAATGACTAAGGATGAAGCTGAGgtatgcaggt ... ttcattgcagCAATTAGTGGTTAAGGCTGTCTCTCTTGCCATTGCTCGTGATGGAGCTAGC
EST: GATTTTTTGACCAAGCATGGAAAGAGGGAATGACGAAGGATGAAGCTGAG CAATTAGTGGTTAAGGCTGTCTCTCTTGCCATTGCTCGTGATGGAGCTAGTEST: gi|110373857|gb|EC938261.1|EC938261
genomic: GATTTTTTGACCAAGCATGGAAAGAGGGAATGACTAAGGATGAAGCTGAGgtatgcaggt ... ttcattgcagCAATTAGTGGTTAAGGCTGTCTCTCTTGCCATTGCTCGTGATGGAGCTAGC
EST: GATTTTTTGACCAAGCATGGAAAGAGGGAATGACGAAGGATGAAGCTGAG CAATTAGTGGTTAAGGCTGTCTCTCTTGCCATTGCTCGTGATGGAGCTAGTEST: gi|110697649|gb|EE074824.1|EE074824
genomic: GATTTTTTGACCAAGCATGGAAAGAGGGAATGACTAAGGATGAAGCTGAGgtatgcaggt ... ttcattgcagCAATTAGTGGTTAAGGCTGTCTCTCTTGCCATTGCTCGTGATGGAGCTAGC
EST: GATTTTTTGACCAAGCATGGAAAGAGGGAATGACGAAGGATGAAGCTGAG CAATTAGTGGTTAAGGCAGTCTCTCTTGCCATCGCTCGTGATGGAGCTAGC
genomic: GATTTTTTGACCAAGCATGGAAAGAGGGAATGACTAAGGATGAAGCTGAGgtatgcaggt ... ttcattgcagCAATTAGTGGTTAAGGCTGTCTCTCTTGCCATTGCTCGTGATGGAGCTAGC
ttttagcttgaatccaagtttttgtgtttaacaaatacctggtgtttcattgcagCAATTAGTGGTTAAGGCTGTCTCTCTTGCCATTGCTCGTGATGGAGCTAGCGGTGGTGTCATCCGCACTGTCATT
gtttaac putative branch site (score: 3)
tttcatt putative PPT
tttaacaaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgcaggttctaccaatacatttttttccatggattttagcttgaatccaagtttttgtgtttaacaaatacctggtgtttcattgcagCAATTAGTGGTTAAGGCTGTCTCTCTTGCCATTGCTCGTGATGGAGCTAGCGGTGGTGTCATCCGCACTGTCATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT