1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...caacctagaacccaattttgaatgcaagattctgttaaagtttggaacttttctgtagcgtttgatgtttgatgcaatatatttatgttggggttgctagGAATGTATGTCGCTAACAGAGCATCGGACAAAATCACACAGCTGACAGATAATGTCTACATTTGTCGCTCTGGATCG
species | Vitis vinifera |
transcript | Vv04s0008g02850.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CACCTACAATGGTGGTGTCGTCCTCGGCGCCGACTCCAGAACCAGCACTG GAATGTATGTCGCTAACAGAGCATCGGAC-AAATCACACAGCTGACAGATAEST: gi|110364685|gb|EC928117.1|EC928117
genomic: CACCTACAATGGTGGTGTCGTCCTCGGCGCCGACTCCAGAACCAGCACTGgtaccctcct ... gggttgctagGAATGTATGTCGCTAACAGAGCATCGGACAAAATCACACAGCTGACAGATA
EST: TGTCGTCCTGGGCGCCGACTCCAGAACCAGCACTG GAATGTATGTCGCTAACAGAGCATCGGACAAAATCACACAGCTGACAGATAEST: gi|30255645|gb|CB971777.1|CB971777
genomic: TGTCGTCCTCGGCGCCGACTCCAGAACCAGCACTGgtaccctcct ... gggttgctagGAATGTATGTCGCTAACAGAGCATCGGACAAAATCACACAGCTGACAGATA
EST: CTCCTACAATGGTGGTGTCGTCCTCGGCGCCGACTCCAGAACCAGCACTG GAATGTATGTCGCTAACAGAGCATCGGAC-AAATCACACAGCTGACAGATAEST: gi|37184119|gb|CF603473.1|CF603473
genomic: CACCTACAATGGTGGTGTCGTCCTCGGCGCCGACTCCAGAACCAGCACTGgtaccctcct ... gggttgctagGAATGTATGTCGCTAACAGAGCATCGGACAAAATCACACAGCTGACAGATA
EST: CACCTACAATGGTGGTGTCGTCCTCGGCGCCGACTCCAGAACCAGCACTG GAATGTATGTCGCTAACAGAGCATCGGACAAAATCACACAGCTGACAGATA
genomic: CACCTACAATGGTGGTGTCGTCCTCGGCGCCGACTCCAGAACCAGCACTGgtaccctcct ... gggttgctagGAATGTATGTCGCTAACAGAGCATCGGACAAAATCACACAGCTGACAGATA
aacttttctgtagcgtttgatgtttgatgcaatatatttatgttggggttgctagGAATGTATGTCGCTAACAGAGCATCGGACAAAATCACACAGCTGACAGATAATGTCTACATTTGTCGCTCTGGATCG
gtttgat putative branch site (score: 5)
aatatatttatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caacctagaacccaattttgaatgcaagattctgttaaagtttggaacttttctgtagcgtttgatgtttgatgcaatatatttatgttggggttgctagGAATGTATGTCGCTAACAGAGCATCGGACAAAATCACACAGCTGACAGATAATGTCTACATTTGTCGCTCTGGATCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
caaccta
- - - - aacccaa
- - - - - - - - - -gaatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gatgcaa