1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...cttttttgttcctcatgctaataatgtttctgttggcttagggatgaatttcatgtattatatttcacccatggattatttacacatctgccttttgcagGCTGCAGATTCTCAGATTGTCTCTGATTATGTGCGTTACTTTCTTCATCAACACAC
species | Vitis vinifera |
transcript | Vv04s0008g02850.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AC-AAATCACACAGCTGACAGATAATGTCTACATTTGTCGCTCTGGATCG GCTGCAGATTCTCAGATTGTCTCTGATTATGTGCGTTACTTTCTTCATCAAEST: gi|110364685|gb|EC928117.1|EC928117
genomic: ACAAAATCACACAGCTGACAGATAATGTCTACATTTGTCGCTCTGGATCGgtactcctct ... ccttttgcagGCTGCAGATTCTCAGATTGTCTCTGATTATGTGCGTTACTTTCTTCATCAA
EST: ACAAAATCACACAGCTGACAGATAATGTCTACATTTGTCGCTCTGGATCG GCTGCAGATTCTCAGATTGTCTCTGACTATGTGCGTTACTTTCTTCATCAAEST: gi|30255645|gb|CB971777.1|CB971777
genomic: ACAAAATCACACAGCTGACAGATAATGTCTACATTTGTCGCTCTGGATCGgtactcctct ... ccttttgcagGCTGCAGATTCTCAGATTGTCTCTGATTATGTGCGTTACTTTCTTCATCAA
EST: AC-AAATCACACAGCTGACAGATAATGTCTACATTTGTCGCTCTGGATCG GCTGCAGATTCTCAGATTGTCTCTGATTATGTGCGTTACTTTCTTCATCAAEST: gi|37184119|gb|CF603473.1|CF603473
genomic: ACAAAATCACACAGCTGACAGATAATGTCTACATTTGTCGCTCTGGATCGgtactcctct ... ccttttgcagGCTGCAGATTCTCAGATTGTCTCTGATTATGTGCGTTACTTTCTTCATCAA
EST: ACAAAATCACACAGCTGACAGATAATGTCTACATTTGTCGCTCTGGATCG GCTGCAGATTCTCAGATTGTCTCTGATTATGTGCGTTACTTTCTTCATCAA
genomic: ACAAAATCACACAGCTGACAGATAATGTCTACATTTGTCGCTCTGGATCGgtactcctct ... ccttttgcagGCTGCAGATTCTCAGATTGTCTCTGATTATGTGCGTTACTTTCTTCATCAA
gaatttcatgtattatatttcacccatggattatttacacatctgccttttgcagGCTGCAGATTCTCAGATTGTCTCTGATTATGTGCGTTACTTTCTTCATCAACACAC
tctgcctttt CT-rich tract
tcatgtattatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttttttgttcctcatgctaataatgtttctgttggcttagggatgaatttcatgtattatatttcacccatggattatttacacatctgccttttgcagGCTGCAGATTCTCAGATTGTCTCTGATTATGTGCGTTACTTTCTTCATCAACACAC
- - - - - -ctcatgc
- - - - - - - - - - - - - - - tgttggc
- - - - - - - - - - - - - - - - - - - - - - - - - tcatgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acacatc