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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGACTCTACAAATCCTTCCAGGAAAATCAGTACCCTGATCGTGCTATGAAAGAAAAATTGGCAGAAGAGCTGGGAATAACGAGCCGGCAGgtgatcctttgtctcattgctgttccagtgggtgtaggttcacatttatctttctcaaaattttctcttgtctag

Basic information

species Vitis vinifera
transcript Vv03s0091g00290.t01
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110718663|gb|EE095752.1|EE095752
EST:     GTGCTATGAAAGAAAAATTGGCAGAAGAGCTGGGAATAACGAGCCGGC--                         ---AGCAAATGGTTTGAGAATGCCCGTTGGAGCTTTCGCCATCGACCACCC
genomic: GTGCTATGAAAGAAAAATTGGCAGAAGAGCTGGGAATAACGAGCCGGCAGgtgatccttt ... tcttgtctagGTTAGCAAATGGTTTGAGAATGCCCGTTGGAGCTTTCGCCATCGACCACCC
EST: gi|27584362|gb|CB007057.1|CB007057
EST:     GTGCTATGAAAGAAAAATTGGCAGAAGAGCTGGGAATAACGAGCCGGCAG                         -----CAAATGGTTTGAGAATGCCCGTTGGAGCTTTCGCCATCGGCCACCC
genomic: GTGCTATGAAAGAAAAATTGGCAGAAGAGCTGGGAATAACGAGCCGGCAGgtgatccttt ... tcttgtctagGTTAGCAAATGGTTTGAGAATGCCCGTTGGAGCTTTCGCCATCGACCACCC
EST: gi|30137204|gb|CB922542.1|CB922542
EST:     GTGCTATGAAAGAAAAATTGGCAGAAGAGCTGGGAATAACGAGCCGGCAG                         GTTAGCAAATGGTTTGAGAATGCCCGTTGGAGCTTTCGCCATCGACCACCC
genomic: GTGCTATGAAAGAAAAATTGGCAGAAGAGCTGGGAATAACGAGCCGGCAGgtgatccttt ... tcttgtctagGTTAGCAAATGGTTTGAGAATGCCCGTTGGAGCTTTCGCCATCGACCACCC
EST: gi|110718223|gb|EE094808.1|EE094808
EST:     GTGCTATGAAAGAAAAATTGGCAGAAGAGCTGGGAATAACGAGCCGGCAG                         GTTAGCAAATGGTTTGAGAATGCCCGTTGGAGCTTTCGCCATCGGCCACCC
genomic: GTGCTATGAAAGAAAAATTGGCAGAAGAGCTGGGAATAACGAGCCGGCAGgtgatccttt ... tcttgtctagGTTAGCAAATGGTTTGAGAATGCCCGTTGGAGCTTTCGCCATCGACCACCC
EST: gi|30137410|gb|CB922748.1|CB922748
EST:     GTGCTATGAAAGAAAAATTGGCAGAAGAGCTGGGAATAACGAGCCGGCAG                         GTTAGCAAATGGTTTGAGAATGCCCGTTGGAGCTTTCGCCATCGACCACCC
genomic: GTGCTATGAAAGAAAAATTGGCAGAAGAGCTGGGAATAACGAGCCGGCAGgtgatccttt ... tcttgtctagGTTAGCAAATGGTTTGAGAATGCCCGTTGGAGCTTTCGCCATCGACCACCC
EST: gi|110718250|gb|EE094867.1|EE094867
EST:     GTGCTATGAAAGAAAAATTGGCAGAAGAGCTGGGAATAACGAGCCGGCAG                         GTTAGCAAATGGTTTGAGAATGCCCGTTGGAGCTTTCGCCATCGACCACCC
genomic: GTGCTATGAAAGAAAAATTGGCAGAAGAGCTGGGAATAACGAGCCGGCAGgtgatccttt ... tcttgtctagGTTAGCAAATGGTTTGAGAATGCCCGTTGGAGCTTTCGCCATCGACCACCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGACTCTACAAATCCTTCCAGGAAAATCAGTACCCTGATCGTGCTATGAAAGAAAAATTGGCAGAAGAGCTGGGAATAACGAGCCGGCAGgtgatcctttgtctcattgctgttccagtgggtgtaggttcacatttatctttctcaaaattttctcttgtctag

- - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCT