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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggagaagcctttcgatcataaccaatgctgactgttttgtagaattttttatttttattttaatttattaattaatttatttttgtttggatgttatttttgtttctgatagtagataactaggaattcttacaagtgcttagatgtgatttcctcttattccagATATTCTGTGCTAAATGTGAGTCCAAAGACATGTCTGCTGATAATGACATAATACTCTGTGACGGTGCTTGTGATCGTGGATTTCACCAGTTTTGTCTGG

Basic information

species Vitis vinifera
transcript Vv03s0091g00290.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv03s0091g00290.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA20G26700.1 (Glycine max), 3'ss of exon 3
gtaggagaagcctttcgatcataaccaatgctgactgttttgtagaattttttatttttattttaatttattaattaatttatttttgtttggatgttatttttgtttctgatagtagataactaggaattcttacaagtgcttagatgtgatttcctcttattccagATATTCTGTGCTAAATGTGAGTCCAAAGACATGTCTGCTGATAATGACATAATACTCTGTGACGGTGCTTGTGATCGTGGATTTCACCAGTTTTGTCTGG
                                                                           ||  ||| |  |  ||  || | |||  ||  | |  || |   |      | |||   |  | ||  ||  |   ||||  |  |    |||||||| ||||| |||||  ||||||||||  ||    || ||||||| ||||| || ||||| |||| |||||||||||||||||||||| | ||| |||
--------------------------------------------------------------------------gtaggttaatcct--ttaaatttaattcctgaatttagtattcatttctctaggatttgga-gattgagtactttaaattttatggtg---cagATATTTTGTGCAAAATGCCAGTCCAAAGAGTTGAGCACTAATAATGATATAATTCTTTGTGATGGTGTTTGTGATCGTGGATTTCACCAGCTCTGTTTGG

upper sequence: Vv03s0091g00290.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA10G40640.2 (Glycine max), 3'ss of exon 2
gtaggagaagcctttcgatcataaccaatgctgactgttttgtagaattttttatttttattttaatttattaattaatttatttttgtttggatgttatttttgtttctgatagtagataactaggaattcttacaagtgcttagatgtgatttcctcttattccagATATTCTGTGCTAAATGTGAGTCCAAAGACATGTCTGCTGATAATGACATAATACTCTGTGACGGTGCTTGTGATCGTGGATTTCACCAGTTTTGTCTGG
                                                                                    |  |||      |||| ||  || ||||   |   |  |||||| ||   | | |||  ||  |   || |  |  |    |||||||| ||||| |||||  ||||||||||  ||    || ||||||| ||||| || ||||| |||| |||||| ||||||||||||||| | ||| |||
-----------------------------------------------------------------------------------gtaggttaatcctttatattaattcctgaattt---tctctaggattttggagatgtgagtactttaaatattatggtg---cagATATTTTGTGCAAAATGCCAGTCCAAAGAGTTGAGCACTAATAATGATATAATTCTTTGTGATGGTGTTTGTGACCGTGGATTTCACCAGCTCTGTTTGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtagataactaggaattcttacaagtgcttagatgtgatttcctcttattccagATATTCTGTGCTAAATGTGAGTCCAAAGACATGTCTGCTGATAATGACATAATACTCTGTGACGGTGCTTGTGATCGTGGATTTCACCAGTTTTGTCTGG
                ttcttac  putative branch site (score: 2)
                                       tttcctcttattcc  putative PPT
              aattctta  TA-rich tract