Sequence
atgc intronic sequence ATGC exonic sequencegtaacatccaactcattcatttgatgctaataaatttgaattagtggttcttgaatcacttattttttcatttatgttttcttatggtgtttattattattctttattttattattgcagTTCCTCCTGATGACGAGGGTTGGCTGTGCCCTGCATGTGATTGCAAAGTTGACTGCATGGACCTGCTTAATGACTCTCAAGGAACAAAACTTTCTGTAAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv03s0091g00290.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: LOC_Os06g12400.1 (Oryza sativa), 3'ss of exon 4
gtaacatccaactcattcatttgatgctaataaatttgaattagtggttcttgaatcacttattttttcatttatgttttcttatggtgtttattattattctttattttattattgcagTTCCTCCTGATGACGAGGGTTGGCTGTGCCCTGCATGTGATTGCAAAGTTGACTGCATGGACCTGCTTAATGACTCTCAAGGAACAAAACTTTCTGTAAT
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-----------------------------gtaatacccattacattttccttta------tatattgaaagctttattagcttgtgttgttatttacc-tgatcaaatgtgtttttttagTTCCACAGGGGGATGAAGGATGGCTTTGCCCTGCATGTGATTGCAAAATTGACTGCATAGATGTATTAAATGAACTCCAAGGGGTCAAACTCTCTATCCA
upper sequence: Vv03s0091g00290.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA20G26700.1 (Glycine max), 3'ss of exon 4
gtaacatccaactcattcatttgatgctaataaatttgaattagtggtt--cttgaatcacttattttttcatttatgttttcttatggtgtttattat-tattctttattttattattgcagTTCCTCCTGATGACGAGGGTTGGCTGTGCCCTGCATGTGATTGCAAAGTTGACTGCATGGACCTGCTTAATGACTCTCAAGGAACAAAACTTTCTGTAAT
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-----------------------------------gtaatcccctggtctacctaaattgattggtaacttaattatgtcaagttatt-tatcttttatgtatttacttctgtggc-ttacagTTCCACCTGGCGATGAGGGTTGGTTATGCCCAGGATGTGATTGCAAAGATGACTGCATGGACCTTGTTAACGACTCCTTTGGAACAAGTCTTTCTATTAG
upper sequence: Vv03s0091g00290.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA10G40640.1 (Glycine max), 3'ss of exon 3
gtaacatccaactcattcatttgatgctaataaatttgaattagtggttcttgaatca--cttatt--ttttcatttatgttttcttatggtgtttattatt---attctttattttatta-ttgcagTTCCTCCTGATGACGAGGGTTGGCTGTGCCCTGCATGTGATTGCAAAGTTGACTGCATGGACCTGCTTAATGACTCTCAAGGAACAAAACTTTCTGTAAT
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-------------------------------------------gtaatcccctggtctaccttattgattggtaactttgttctttcaagttatttatcatttatatatttacttctgtggcttacagTTCCACCTGGCGATGAGGGTTGGTTATGCCCAGGATGTGATTGCAAAGATGACTGCATGGACCTTGTTAACGACTCCTTCGGAACAAGTCTCTCTATTAG
upper sequence: Vv03s0091g00290.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT3G19510.1 (Arabidopsis thaliana), 3'ss of exon 4
gtaacatccaactcattcatttgatgctaataaatttgaattagtggttcttgaatcacttattttttcatttatgttttcttatggtgtttattattattctttattttattattgcagTTCCTCCTGATGACGAGGGTTGGCTGTGCCCTGCATGTGATTGCAAAGTTGACTGCATGGACCTGCTTAATGACTCTCAAGGAACAAAACTTTCTGTAAT
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-----------gtaat--attctctgcctacgtacttgg--tagtg--ttttaagcagttcttgctggtatctacagct-------gtcttttttgttggttttaatttt-----tgtagTTCCTCCGGATGATGAGGGTTGGCTATGCCCCGGATGTGATTGCAAAGATGACAGCTTGGACTTGCTTAATGATTCTTTAGGGACAAAATTTTCGGTCAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttcatttatgttttcttatggtgtttattattattctttattttattattgcagTTCCTCCTGATGACGAGGGTTGGCTGTGCCCTGCATGTGATTGCAAAGTTGACTGCATGGACCTGCTTAATGACTCTCAAGGAACAAAACTTTCTGTAAT
ttctttattttatt CT-rich tract
ttttcttatggtgttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaacatccaactcattcatttgatgctaataaatttgaattagtggttcttgaatcacttattttttcatttatgttttcttatggtgtttattattattctttattttattattgcagTTCCTCCTGATGACGAGGGTTGGCTGTGCCCTGCATGTGATTGCAAAGTTGACTGCATGGACCTGCTTAATGACTCTCAAGGAACAAAACTTTCTGTAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA