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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGATATACCATCACTATTGTGCTATGATTATGGCTCTCGTTAGTCTCACATGGGAAATCAAGGGACAACCAAACTGCGCACAAAAGCAGgttactgcatttccattataaattgattaaatttttttatatttatttgataggaccatttaaatcttgtgcag

Basic information

species Vitis vinifera
transcript Vv02s0025g03210.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0025g03210.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: LOC_Os08g05660.1 (Oryza sativa), 5'ss of exon 6
GTGGATATACCATCACTATTGTGCTATGATTATGGCTCTCGTTAGTCTCACATGGGAAATCAAGGGACAACCAAACTGCGCACAAAAGCAGgt--------tactgcatttccattataaattg-----attaaattt-------ttttatatttatttg-ataggaccatttaaat---cttgtgcag----------------------------------
|||||| | ||||||||||||||| ||| | ||| ||||  ||||||| |||||||| || |||||||||||  | ||  | | ||| |||||        |  |   |||||| |||| | ||     | | ||| |        | |||| |||||   | ||   | |  |  |     ||||| |                                  
GTGGATGTGCCATCACTATTGTGCCATGCTGATGTCTCTTATTAGTCTAACATGGGAGATAAAGGGACAACCTGATTGTTCTCGAAAACAGgtatgcaattttttttctttccactatatactgtacataatgaatgtgcataacctgtatacttattcacagagaggcgtcgagctgtttctgtgctgggccataatgcaaggtttcgccatgatgttgcag

upper sequence: Vv02s0025g03210.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: LOC_Os02g01720.1 (Oryza sativa), 5'ss of exon 6
GTGGATATACCATCACTATTGTGCTATGATTATGGCTCTCGTTAGTCTCACATGGGAAATCAAGGGACAACCAAACTGCGCACAAAAGCAGgttactg--catttccattataaattgattaa--atttttttata-----tttatttgataggaccatttaaatcttgtgcag---------------
|||||||||||| |||||||  || ||| | |||||||||||||| || |||||||| || || ||||| ||  | ||  |    |||||||| | ||  |||||     | |||   |  |   | ||| | ||      || |  |  | ||| |  | || ||     |                 
GTGGATATACCACCACTATTTAGCAATGCTAATGGCTCTCGTTAGCCTTACATGGGAGATAAAAGGACAGCCTGATTGTTCCAGCAAGCAGgtaaatgatcatttttcagagaaaactagcactcactttgtcatcaaaccttcaaatttttggaacgctgaactcagacactatggctttcttttcag

upper sequence: Vv02s0025g03210.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA10G44190.3 (Glycine max), 5'ss of exon 5
GTGGATATACCATCACTATTGTGCTATGATTATGGCTCTCGTTAGTCTCACATGGGAAATCAAGGGACAACCAAACTGCGCACAAAAGCAGgttactgcatttccattataaattgattaaatttttttatatttatttgataggaccatttaaatcttgtgcag-----------------
||||||||| |||||||||||||||||| | ||||| ||||| |||||||| ||||| || || ||||||||| |||| ||| |||||||||||| |    |  |  |    ||  | |   ||| ||  | ||| ||| ||       | ||| | ||||                     
GTGGATATATCATCACTATTGTGCTATGGTGATGGCCCTCGTGAGTCTCACTTGGGAGATTAAAGGACAACCAGACTGTGCAAAAAAGCAGgttagtttcctagccctgcgcatacagttt-tttcttcctttttgtttaattattttgtgtaactattgtttgtctcaataatgcatgcag

upper sequence: Vv02s0025g03210.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA20G38960.2 (Glycine max), 5'ss of exon 6
GTGGATATACCATCACTATTGTGCTATGATTATGGCTCTCGTTAGTCTCACATGGGAAATCAAGGGACAACCAAACTGCGCACAAAAGCAGgttactgcatttccattataaattgattaaatttttttatatttatt--tgataggaccatttaaatcttgtgcag-----------------
||||||||| ||||| |||||||||||| | ||||| ||||| |||||||| ||||| || || ||||||||| |||| ||| |||||||||||  |    |  |  | |  ||  | |   || ||   | ||||||  | ||       | ||| | ||||                     
GTGGATATATCATCATTATTGTGCTATGGTGATGGCCCTCGTGAGTCTCACTTGGGAGATTAAAGGACAACCAGACTGTGCAAAAAAGCAGgttggtttcctagccctgtgcatatagttttttcttccttttttatttttaatcatgttgtgtaactattgtttgtctcaataatgcatgcag

upper sequence: Vv02s0025g03210.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT4G10430.1 (Arabidopsis thaliana), 5'ss of exon 6
GTGGATATACCATCACTATTGTGCTATGATTATGGCTCTCGTTAGTCTCACATGGGAAATCAAGGGACAACCAAACTGCGCACAAAAGCAGgttac---tgcatttccat---tataaattgattaaatttttttatatttatttgata-ggaccatttaaatcttgtgcag
|||| |||| ||||| |||||||| |||  |||||| || || || ||||||||||||||||| || ||||||||||| |  || || ||||| |    |  | ||  ||   | ||    || ||||   ||    |  ||  |  ||   |  | || |||  ||     
GTGGCTATATCATCATTATTGTGCCATGGCTATGGCCCTTGTCAGCCTCACATGGGAAATCAAAGGTCAACCAAACTGTGTCCAGAAACAGgtaatgcttagacttatatctgtttatgaagactaaaaagttcacaaagtaaatattatatatgacttcaattctgcag--

upper sequence: Vv02s0025g03210.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT1G33230.1 (Arabidopsis thaliana), 5'ss of exon 6
GTGGATATACCATCACTATTGTGCTATGATTATGGCTCTCGTTAGTCTCACATGGGAAATCAAGGGACAACCAAACTGCGCACAAAAGCAGgt------tactgcatttccattataaatt--gattaaatttttttatatttatttgataggaccatttaaatcttgtgcag
|||| | || ||||| |||| ||| |||  |||| | || || |||||||| ||||||||||| || |||||||||||||  || ||||||||      || |   ||   || ||| ||   || |||| | | |   |   || | ||||     | |||||||  |||||
GTGGCTTTATCATCATTATTTTGCAATGGCTATGTCCCTTGTCAGTCTCACTTGGGAAATCAAAGGTCAACCAAACTGCGTTCAGAAGCAGgtattgggtattaacttattatcatacatgcagagtaaaatctatccaacaaatgttatagattattctaaatctattgcag