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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttactgcatttccattataaattgattaaatttttttatatttatttgataggaccatttaaatcttgtgcagAGAGGGGTACAACTTTTCCTACAATGGGCTATGATGCAAGGAGTTGCTATGCTACTACAAAATAGATATCAACGCCAGAGACTTTATACTCGCATTGCAT

Basic information

species Vitis vinifera
transcript Vv02s0025g03210.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0025g03210.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA10G44190.3 (Glycine max), 3'ss of exon 5
----gttact--gcatttccattataaattgat-taaatttttttatatttatttgataggaccatt-------taaatcttg--tgcagAGAGGGGTACAACTTTTCCTACAATGGGCTATGATGCAAGGAGTTGCTATGCTACTACAAAATAGATATCAACGCCAGAGACTTTATACTCGCATTGCAT
    ||| |   ||  | |   || |  ||  | |   ||||| | || ||||||  |   || |||       | |||  ||  |||||||||| ||||||||||| ||||| ||||||||||||||||||||||| |||||  | |||||||||||||||||||| |||||||||||||| |||||||
gttagtttcctagccctgcgcatacagttttttcttcctttttgtttaattattttgtgtaactattgtttgtctcaataatgcatgcagAGAGGTGTACAACTTTTTCTACAGTGGGCTATGATGCAAGGAGTTGCAATGCTTTTGCAAAATAGATATCAACGCCAAAGACTTTATACTCGTATTGCAT

upper sequence: Vv02s0025g03210.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA20G38960.2 (Glycine max), 3'ss of exon 6
----gttact--gcatttccattataaattgattaaatttttttatatttatttg----ataggaccatt-------taaatcttg--tgcagAGAGGGGTACAACTTTTCCTACAATGGGCTATGATGCAAGGAGTTGCTATGCTACTACAAAATAGATATCAACGCCAGAGACTTTATACTCGCATTGCAT
    ||| |   ||  |     ||||  ||  |     |||||||| |||| |       |   || |||       | |||  ||  |||||||||| ||||||||||| ||||| ||||||||||||||||||||||| |||||  | ||||| |||||||||||||| ||||| |||||||| |||||||
gttggtttcctagccctgtgcatatagttttttcttccttttttatttttaatcatgttgtgtaactattgtttgtctcaataatgcatgcagAGAGGTGTACAACTTTTTCTACAGTGGGCTATGATGCAAGGAGTTGCAATGCTTTTGCAAAACAGATATCAACGCCAAAGACTCTATACTCGTATTGCAT

upper sequence: Vv02s0025g03210.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT4G10430.1 (Arabidopsis thaliana), 3'ss of exon 6
-------gttactgcatttccatt-ataaattgattaaatttttttatatttatttgataggaccatttaaatcttgtgcagAGAGGGGTACAACTTTTCCTACAATGGGCTATGATGCAAGGAGTTGCTATGCTACTACAAAATAGATATCAACGCCAGAGACTTTATACTCGCATTGCAT
        |      || ||  || || ||      ||| ||    |  |  || | |||  |  | || |||  ||  |||||||| || || ||||||||||||||||||||||||||||| || || |||||  ||||||| |||||||||||||| ||| | || |||||||||||| 
gtaatgcttagacttatatctgtttatgaagactaaaaagttcacaaagtaaatattatat-atgacttcaattctg--cagAGAGGAGTCCATCTTTTCCTACAATGGGCTATGATGCAAGGTGTCGCCATGCTTTTACAAAACAGATATCAACGCCAAAGATTATACACTCGCATTGCAC

upper sequence: Vv02s0025g03210.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT1G33230.1 (Arabidopsis thaliana), 3'ss of exon 6
------gttactgcatttccattataaatt--gattaaatttttttatatttatttgataggaccatttaaatcttgtgcagAGAGGGGTACAACTTTTCCTACAATGGGCTATGATGCAAGGAGTTGCTATGCTACTACAAAATAGATATCAACGCCAGAGACTTTATACTCGCATTGCAT
      | || |   ||   || ||| ||   || |||| | | |   |   || | ||||     | |||||||  |||||| ||| || |  |||||||| |||||||||||||||||||| || || ||||| || |||||||||||||| ||||| ||| | || |||||||||||| 
gtattgggtattaacttattatcatacatgcagagtaaaatctatccaacaaatgttatagattattctaaatctattgcagAAAGGAGTGCGTCTTTTCCTCCAATGGGCTATGATGCAAGGTGTCGCGATGCTTCTGCAAAATAGATATCAGCGCCAAAGATTATACACTCGCATTGCAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaattgattaaatttttttatatttatttgataggaccatttaaatcttgtgcagAGAGGGGTACAACTTTTCCTACAATGGGCTATGATGCAAGGAGTTGCTATGCTACTACAAAATAGATATCAACGCCAGAGACTTTATACTCGCATTGCAT
      attaaatttttttata  TA-rich tract