Sequence
atgc intronic sequence ATGC exonic sequenceGCATGGCTGTTGTTCCTTTACACAGGTTTAGCTTTGCGAGAGAACATCTTAAGAGTGAATGGAAGTGATATTCGTCCATGgtaattacatgtgatcttgtgccgttgaattttgttgagtgcttaacttactgttttctatacttattgactgttatttattaatctgcttaggggacat...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0025g03210.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os08g05660.1 (Oryza sativa), 5'ss of exon 5
GCATGGCTGTTGTTCCTTTACACAGGTTTAGCTTTGCGAGAGAACATCTTAAGAGTGAATGGAAGTGATATTCGTCCATGgtaattacatgtgatcttgtgccgttgaattt----tgttgagtgcttaacttactgttttctatacttattgactgttatttattaatctgcttaggggacat
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GCTTGGTTGTTGTTTCTGTATACAACTTTAGCTCTGCGAGAGAACATATTACGAGTTAATGGAAGTGATATCCGTCCTTGgtaaggggaaaaaaaaacaaaatttggaattgcccatatacaaaaatgaagagggtgtagcc-attcttgttctctaatttttgcatgtcag--tagttacca-
upper sequence: Vv02s0025g03210.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G154328_T01 (Zea mays), 5'ss of exon 5
GCATGGCTGTTGTTCCTTTACACAGGTTTAGCTTTGCGAGAGAACATCTTAAGAGTGAATGGAAGTGATATTCGTCCATGgtaattacatgtgatcttgtgccgttgaattttgttgagtgcttaacttactgttttctatacttattgactgttatttattaatct---gcttaggggacat------------------------------------------------------------------------------------------
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GCTTGGTTATTATTCCTGTATACCAGTTTAGCTTTGCGTGAGAACATACTGCGAGTTAATGGAAGTGATATTCGTCCTTGgtaaggatcactgatgctctgccatatgatcgtatctgaaaa--agctaagaatgttctg-gcctgtgggtcaaaagcttttaaactaatgcatatgggataacttctgttttccaagacctatttgttcacttccatttgcctttttttctgttccatactgtgactgtctcttgttgttttctcccttaag
upper sequence: Vv02s0025g03210.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G088648_T01 (Zea mays), 5'ss of exon 5
GCATGGCTGTTGTTCCTTTACACAGGTTTAGCTTTGCGAGAGAACATCTTAAGAGTGAATGGAAGTGATATTCGTCCATGgtaattacatgtgatcttgtgccgttgaattttgtt--gagtgcttaact-tactgttttctatacttattgactgttatttattaatctgcttaggggacat
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GCTTGGTTGTTATTCCTGTATACTAGTTTAGCTTTGCGTGAGAACATACTGCGAGTTAATGGAAGCGATATTCGTCCTTGgtaaggatcactgatggtctggcatataatcatatctgaagaaaataatggtgttgtggcctgcggatagaggtggtaatggatcacgatacaaatgttc---
upper sequence: Vv02s0025g03210.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA10G44190.3 (Glycine max), 5'ss of exon 4
GCATGGCTGTTGTTCCTTTACACAGGTTTAGCTTTGCGAGAGAACATCTTAAGAGTGAATGGAAGTGATATTCGTCCATGgta-----attacatgtgat-cttgtgccgttgaattttgttgagtgcttaacttactgttttctatacttattgactgttatttattaatctgcttaggggacat
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GCGTGGCTGCTATTCCTTTACACCGGTTTGGCATTGCGAGAGAACATATTGAGAGTCAATGGAAGTGATATTCGTCCCTGgtatagtcattaaacttgatgtttgaatggatcatagttaatgggta-ttgggttcctggtt-ctatgcttgttgcttgttctttaatgacgtgagtgaaac----
upper sequence: Vv02s0025g03210.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA20G38960.2 (Glycine max), 5'ss of exon 5
GCATGGCTGTTGTTCCTTTACACAGGTTTAGCTTTGCGAGAGAACATCTTAAGAGTGAATGGAAGTGATATTCGTCCATGgta-----attacatgtgat-cttgtgccgttgaattttgttgagtgcttaacttactgttttctatacttattgactgttatttattaatctgcttaggggacat
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GCCTGGCTGCTATTCCTTTACACCGGTTTGGCATTGCGAGAGAACATATTGAGAGTCAATGGAAGTGATATTCGTCCCTGgtatagtcattaaacttgatgtttgcatggatcatagttaatgggta-ttgagttcctggtt-ctatgctcgttgcttgttctttaatcacatgagtgaaac----
upper sequence: Vv02s0025g03210.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT1G33230.1 (Arabidopsis thaliana), 5'ss of exon 5
GCATGGCTGTTGTTCCTTTACACAGGTTTAGCTTTGCGAGAGAACATCTTAAGAGTGAATGGAAGTGATATTCGTCCATGgtaattacat-gtgatcttgtgccgttga-----attttgttgagtgcttaacttactgttttctatacttattgactgttatttatt---aatctgcttaggggacat
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GCTTGGCTACTGTTTCTTTATGCTGGTTTGGTTATGCGAGAGAACATTTTAAGAGCTAATGGGAGTGATATCCGTTCATGgtactcttatcatattcctcctgagttgattatagttgtattgatctcttaagttgtggttggctattgttatgcagtgttttaaatttgaagtatgcta---------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30326618|gb|CD009880.1|CD009880EST: GCTTTGCGAGAGAACATCTTAAGAGTGAATGGAAGTGATATTCGTCCATG GTGGATATACCATCCCTATTGTGCTATGA
genomic: GCTTTGCGAGAGAACATCTTAAGAGTGAATGGAAGTGATATTCGTCCATGgtaattacat ... gctttcgcagGTGGATATACCATCACTATTGTGCTATGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCATGGCTGTTGTTCCTTTACACAGGTTTAGCTTTGCGAGAGAACATCTTAAGAGTGAATGGAAGTGATATTCGTCCATGgtaattacatgtgatcttgtgccgttgaattttgttgagtgcttaacttactgttttctatacttattgactgttatttattaatctgcttaggggacat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggggaca