1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gttagaggggtcctttttcttctcatcttgttctaacgggttaagctttagGATTTTGCGGACCTTCTTCAAGCTCCTCACGCTGATGCGGAAGCCATTTCGAAGGAAAGGTTCCCCGTTCCACGCCTTGTCGTCTGCGACCAACATGGTT
species | Selaginella moellendorffii |
transcript | EFJ32207 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CGATTGCACAGTGGCGAAATTTGGGATACCAAAACCAACCTGAATACAAG GATTTTGCGGACCTTCTTCAAGCTCCTCACACTGATGCGGAAGCAATTTCGEST: gi|169108739|gb|FE513008.1|FE513008
genomic: CGATTGCACAGTGGCGAAATTTGGGATACCAAAACCAACCTGAATACAAGgttagagggg ... taagctttagGATTTTGCGGACCTTCTTCAAGCTCCTCACGCTGATGCGGAAGCCATTTCG
EST: CGATTGCACAGTGGCGAAATTTGGGATACCAAAACCAACCTGAATACAAG GATTTTGCGGACCTTCTTCAAGCTCCTCACACTGATGCGGAAGCAATTTCGEST: gi|169051944|gb|FE459048.1|FE459048
genomic: CGATTGCACAGTGGCGAAATTTGGGATACCAAAACCAACCTGAATACAAGgttagagggg ... taagctttagGATTTTGCGGACCTTCTTCAAGCTCCTCACGCTGATGCGGAAGCCATTTCG
EST: CGATTGCACAGTGGCGAAATTTGGGATACCAAAACCAACCTGAATACAAG GATTTTGCGGACCTTTTTCAAGCTCCTCACGCTGATGCGGAAGCCATTTCGEST: gi|70669204|gb|DN837781.1|DN837781
genomic: CGATTGCACAGTGGCGAAATTTGGGATACCAAAACCAACCTGAATACAAGgttagagggg ... taagctttagGATTTTGCGGACCTTCTTCAAGCTCCTCACGCTGATGCGGAAGCCATTTCG
EST: CGATTGCACAGTGGCGAAATTTGGGATACCAAAACCAACCTGAATACAAG GATTTTGCGGACCTTCTTCAAGCTCCTCACGCTGATGCGGAAGCCATTTCGEST: gi|169041328|gb|FE446858.1|FE446858
genomic: CGATTGCACAGTGGCGAAATTTGGGATACCAAAACCAACCTGAATACAAGgttagagggg ... taagctttagGATTTTGCGGACCTTCTTCAAGCTCCTCACGCTGATGCGGAAGCCATTTCG
EST: CGATTGCACAGTGGCGAAATTTGGGATACCAAAACCAACCTGAATACAAG GATTTTGCGGACCTTCTTCAAGCTCCTCACACTGATGCGGAAGCAATTTCEST: gi|169064389|gb|FE472056.1|FE472056
genomic: CGATTGCACAGTGGCGAAATTTGGGATACCAAAACCAACCTGAATACAAGgttagagggg ... taagctttagGATTTTGCGGACCTTCTTCAAGCTCCTCACGCTGATGCGGAAGCCATTTC
EST: CGATTGCACAGTGGCGAAATTTGGGATACCAAAACCAACCTGAATACAAG GATTTTGCGGACCTTCTTCAAGCTCCTCACACTGATGCGGAAGCAATTTCGEST: gi|169039834|gb|FE447520.1|FE447520
genomic: CGATTGCACAGTGGCGAAATTTGGGATACCAAAACCAACCTGAATACAAGgttagagggg ... taagctttagGATTTTGCGGACCTTCTTCAAGCTCCTCACGCTGATGCGGAAGCCATTTCG
EST: CGATTGCACAGTGGCGAAATTTGGGATACCAAAACCAACCTGAATACAAG GATTTTGCGGAC-TTC---AAGCTCCTCACACTGATGCGGAAGCAATTTCG
genomic: CGATTGCACAGTGGCGAAATTTGGGATACCAAAACCAACCTGAATACAAGgttagagggg ... taagctttagGATTTTGCGGACCTTCTTCAAGCTCCTCACGCTGATGCGGAAGCCATTTCG
gttagaggggtcctttttcttctcatcttgttctaacgggttaagctttagGATTTTGCGGACCTTCTTCAAGCTCCTCACGCTGATGCGGAAGCCATTTCGAAGGAAAGGTTCCCCGTTCCACGCCTTGTCGTCTGCGACCAACATGGTT
ttctaac putative branch site (score: 8)
tttttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagaggggtcctttttcttctcatcttgttctaacgggttaagctttagGATTTTGCGGACCTTCTTCAAGCTCCTCACGCTGATGCGGAAGCCATTTCGAAGGAAAGGTTCCCCGTTCCACGCCTTGTCGTCTGCGACCAACATGGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA