1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
AGTCTCCAAGAAGGTTTCGATCAGGAGGCAGCAGCAGTCATCGTGGCAAAGCTAGCTTGCCATCGAATGGAGGCTGAGgtagttactgctgcattgtaatttctcggagcttacttgttttttttctttattttgtag
species | Selaginella moellendorffii |
transcript | EFJ32207 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CAGCAGCAGTCATCGTGGCAAAGCTAGCTTGCCATCGAATGGAGGCTGAG GACGAATTTATTCCCAGTCGATGGCTTGATAGGTTATTGATTCGACTATGCEST: gi|169108739|gb|FE513008.1|FE513008
genomic: CAGCAGCAGTCATCGTGGCAAAGCTAGCTTGCCATCGAATGGAGGCTGAGgtagttactg ... tattttgtagGACGAATTTAATCCCAGTCGATGGCTTGATAGGTTATTGATTCGACTATGC
EST: GCAAAGCTAGCTTGCCATCGAATGGAGGCTGAG GACGAATTTAATCCCAGTCGATGGCTTGATAGGTTATTGATTCGACTATGCEST: gi|169051945|gb|FE459049.1|FE459049
genomic: GCAAAGCTAGCTTGCCATCGAATGGAGGCTGAGgtagttactg ... tattttgtagGACGAATTTAATCCCAGTCGATGGCTTGATAGGTTATTGATTCGACTATGC
EST: CAGCAGCAGTCATCGTGGCAAAGCTAGCTTGCCATCGAATGGAGGCTGAG GACGAATTTAATCCCAGTCGATGGCTTGATAGGTTATTGATTCGACTATGCEST: gi|169041328|gb|FE446858.1|FE446858
genomic: CAGCAGCAGTCATCGTGGCAAAGCTAGCTTGCCATCGAATGGAGGCTGAGgtagttactg ... tattttgtagGACGAATTTAATCCCAGTCGATGGCTTGATAGGTTATTGATTCGACTATGC
EST: CAGCAGCAGTCATCGTGGCAAAGCTAGCTTGCCATCGAATGGAGGCTGAG GACGAATTTAATCCCAGTCGATGGCTTGATAGGTTATTGATTCGACTATGCEST: gi|169064389|gb|FE472056.1|FE472056
genomic: CAGCAGCAGTCATCGTGGCAAAGCTAGCTTGCCATCGAATGGAGGCTGAGgtagttactg ... tattttgtagGACGAATTTAATCCCAGTCGATGGCTTGATAGGTTATTGATTCGACTATGC
EST: TCGAATGGAGGCTGAG GACGAATTTAATCCCAGTCGATGGCTTGATAGGTTATTGATTCGACTATGCEST: gi|169039834|gb|FE447520.1|FE447520
genomic: TCGAATGGAGGCTGAGgtagttactg ... tattttgtagGACGAATTTAATCCCAGTCGATGGCTTGATAGGTTATTGATTCGACTATGC
EST: CGTGGCAAAGCTAGCTTGCCATCGAATGGAGGCTGAG GACGAATTTAATCCCAGTCGATGGCTTGATAGGTTATTGATTCGACTATGC
genomic: CGTGGCAAAGCTAGCTTGCCATCGAATGGAGGCTGAGgtagttactg ... tattttgtagGACGAATTTAATCCCAGTCGATGGCTTGATAGGTTATTGATTCGACTATGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTCTCCAAGAAGGTTTCGATCAGGAGGCAGCAGCAGTCATCGTGGCAAAGCTAGCTTGCCATCGAATGGAGGCTGAGgtagttactgctgcattgtaatttctcggagcttacttgttttttttctttattttgtag
- - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG