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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCGGACCTTCTTCAAGCTCCTCACGCTGATGCGGAAGCCATTTCGAAGGAAAGGTTCCCCGTTCCACGCCTTGTCGTCTGCGACCAACATGGTTCTCAGgtaaaaactgtttgtggcttttgatggattcaatatctcttgttgtgttgcag

Basic information

species Selaginella moellendorffii
transcript EFJ32207
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169041327|gb|FE446857.1|FE446857
EST:     AAAGGTTCCCCGTTCCACGCCTTGTCGTCTGTGACCAACATGGTTCTCAG                         GCCCGATTTTTGCTAGCACGGCTGAATCCATCGGCTACATACAACAGCGCA
genomic: AAAGGTTCCCCGTTCCACGCCTTGTCGTCTGCGACCAACATGGTTCTCAGgtaaaaactg ... tgtgttgcagGCCCGATTTTTGCTAGCACGGCTGAATCCATCGGCTACATACAACAGCGCA
EST: gi|169108739|gb|FE513008.1|FE513008
EST:     AAAGGTTCCCCGTTCCACGCCTTGTCGTCTGTGACCAACATGGTTCTCAG                         GCCCGATTTTTGCTAGCACGGCTGAATCCATCGGCTACATACAACAGCGCA
genomic: AAAGGTTCCCCGTTCCACGCCTTGTCGTCTGCGACCAACATGGTTCTCAGgtaaaaactg ... tgtgttgcagGCCCGATTTTTGCTAGCACGGCTGAATCCATCGGCTACATACAACAGCGCA
EST: gi|169051944|gb|FE459048.1|FE459048
EST:     AAAGGTTCCCCGTTCCACGCCTTGTCGTTTGCGACCAACATGGTTTTCAG                         GCCCGATTTTTGCTAGCACGGCTGAATCCATTGGCTACATACAACAGCGCA
genomic: AAAGGTTCCCCGTTCCACGCCTTGTCGTCTGCGACCAACATGGTTCTCAGgtaaaaactg ... tgtgttgcagGCCCGATTTTTGCTAGCACGGCTGAATCCATCGGCTACATACAACAGCGCA
EST: gi|70669204|gb|DN837781.1|DN837781
EST:     AAAGGTTCCCCGTTCCACGCCTTGTCGTCTGCGACCAACATGGTTCTCAG                         GCCCGATTTTTGCTAGCACGGCTGAATCCATCGGCTACATACAACAGCGCA
genomic: AAAGGTTCCCCGTTCCACGCCTTGTCGTCTGCGACCAACATGGTTCTCAGgtaaaaactg ... tgtgttgcagGCCCGATTTTTGCTAGCACGGCTGAATCCATCGGCTACATACAACAGCGCA
EST: gi|169064389|gb|FE472056.1|FE472056
EST:     AAAGGTTCCCCGTTCCACGCCTTGTCGTCTGTGACCAACATGGTTCTCAG                         GCCCGATTTTTGCTAGCACGGCTGAATCCATCGGCTACATACAACAGCGCA
genomic: AAAGGTTCCCCGTTCCACGCCTTGTCGTCTGCGACCAACATGGTTCTCAGgtaaaaactg ... tgtgttgcagGCCCGATTTTTGCTAGCACGGCTGAATCCATCGGCTACATACAACAGCGCA
EST: gi|169039834|gb|FE447520.1|FE447520
EST:     AAAGGTTCCCCGTTCCACGCCTTGTCGTCTGTGACCAACATGGTTCTCAG                         GCCCGATTTTTGCTAGCACGGCTGAATCCATCGGCTACATACAACAGCGCA
genomic: AAAGGTTCCCCGTTCCACGCCTTGTCGTCTGCGACCAACATGGTTCTCAGgtaaaaactg ... tgtgttgcagGCCCGATTTTTGCTAGCACGGCTGAATCCATCGGCTACATACAACAGCGCA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 34 (upstream exon), 30 (downstream exon)
Score: 14

TGCGGACCTTCTTCAAGCTCCTCACGCTGATGCGGAAGCCATTTCGAAGGAAAGGTTCCCCGTTCCACGCCTTGTCGTCTGCGACCAACATGGTTCTCAGgtaaaaactg ... tgtgttgcagGCCCGATTTTTGCTAGCACGGCTGAATCCATCGGCTACATACAACAGCGCACCGGCTGGTGCCGAGCTTATATTCACGGACGACGTGAGCCTTCAAGTTT




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