1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaagttttgttattctcttcgttttttgtggagtttcttctttggttctttcgaggctaagcttttgctcttttttctttctttccagAGCAAAAGAACAAGTATGCTGTTCGCGATCCCATTGCTGCTTTCAAGAAGTACTTGCTGGAGAACGGACTGGCCAGTGAGGCGGACTTGAAAGCCATCGA
species | Selaginella moellendorffii |
transcript | EFJ29991 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCGGTATAGAGGCCATTCTCTCGCCGACCCGGACGAGCTCCGGAAGCCTG AGCAAAAGAACAAGTATGCCGTTCGCGATCCCATCGCTGCTTTCAAGAAGTEST: gi|169069941|gb|FE480375.1|FE480375
genomic: CCGGTATAGAGGCCATTCTCTCGCCGACCCGGACGAGCTCCGGAAGCCTGgtaagttttg ... ttctttccagAGCAAAAGAACAAGTATGCTGTTCGCGATCCCATTGCTGCTTTCAAGAAGT
EST: CCGGTATAGAGGCCATTCTCTCGCCGACCCGGACGAGCTCCGGAAGCCTG AGCAAAAGAACAAGTATGCTGTTCGCGATCCCATTGCTGCTTTCAAGAAGTEST: gi|169022505|gb|FE429389.1|FE429389
genomic: CCGGTATAGAGGCCATTCTCTCGCCGACCCGGACGAGCTCCGGAAGCCTGgtaagttttg ... ttctttccagAGCAAAAGAACAAGTATGCTGTTCGCGATCCCATTGCTGCTTTCAAGAAGT
EST: CCGGTATAGAGGCCATTCTCTCGCCGACCCGGACGAGCTCCGGAAGCCTG AGCAAAAGAACAAGTATGCTGTTCGCGATCCCATTGCTGCTTTCAAGAAGTEST: gi|169076874|gb|FE485280.1|FE485280
genomic: CCGGTATAGAGGCCATTCTCTCGCCGACCCGGACGAGCTCCGGAAGCCTGgtaagttttg ... ttctttccagAGCAAAAGAACAAGTATGCTGTTCGCGATCCCATTGCTGCTTTCAAGAAGT
EST: CCGGTATAGAGGCCATTCTCTCGCCGACCCGGACGAGCTCCGGAAGCCTG AGCAAAAGAACAAGTATGCTGTTCGCGATCCCATTGCTGCTTTCAAGAAGTEST: gi|169105100|gb|FE505929.1|FE505929
genomic: CCGGTATAGAGGCCATTCTCTCGCCGACCCGGACGAGCTCCGGAAGCCTGgtaagttttg ... ttctttccagAGCAAAAGAACAAGTATGCTGTTCGCGATCCCATTGCTGCTTTCAAGAAGT
EST: CCGGTATAGAGGCCATTCTCTCGCCGACCCGGACGAGCTCCGGAAGCCTG AGCAAAAGAACAAGTATGCTGTTCGCGATCCCATTGCTGCTTTCAAGAAGTEST: gi|169035902|gb|FE442370.1|FE442370
genomic: CCGGTATAGAGGCCATTCTCTCGCCGACCCGGACGAGCTCCGGAAGCCTGgtaagttttg ... ttctttccagAGCAAAAGAACAAGTATGCTGTTCGCGATCCCATTGCTGCTTTCAAGAAGT
EST: TCGGTATAGAGGCCATTCTCTCGCCGACCCGGACGAGCTCCGGAAGCCTG AGCAAAAGAACAAGTATGCCGTTCGCGATCCCATCGCTGCTTTCAAGAAGTEST: gi|169049961|gb|FE458053.1|FE458053
genomic: CCGGTATAGAGGCCATTCTCTCGCCGACCCGGACGAGCTCCGGAAGCCTGgtaagttttg ... ttctttccagAGCAAAAGAACAAGTATGCTGTTCGCGATCCCATTGCTGCTTTCAAGAAGT
EST: TCGGTATAGAGGCCATTCTCTCGCCGACCCGGACGAGCTCCGGAAGCCTG AGCAAAAGAACAAGTATGCCGTTCGCGATCCCATCGCTGCTTTCAAGAAGTEST: gi|169022506|gb|FE429390.1|FE429390
genomic: CCGGTATAGAGGCCATTCTCTCGCCGACCCGGACGAGCTCCGGAAGCCTGgtaagttttg ... ttctttccagAGCAAAAGAACAAGTATGCTGTTCGCGATCCCATTGCTGCTTTCAAGAAGT
EST: CCGGTATAGAGGCCATTCTCTCGCCGACCCGGACGAGCTCCGGAAGCCTG AGCAAAAGAACAAGTATGCTGTTCGCGATCCCATTGCTGCTTTCAAGAAGTEST: gi|169033011|gb|FE441345.1|FE441345
genomic: CCGGTATAGAGGCCATTCTCTCGCCGACCCGGACGAGCTCCGGAAGCCTGgtaagttttg ... ttctttccagAGCAAAAGAACAAGTATGCTGTTCGCGATCCCATTGCTGCTTTCAAGAAGT
EST: TCGGTATAGAGGCCATTCTCTCGCCGACCCGGACGAGCTCCGGAAGCCTG AGCAAAAGAACAAGTATGCCGTTCGCGATCCCATCGCTGCTTTCAAGAAGTEST: gi|169051782|gb|FE458990.1|FE458990
genomic: CCGGTATAGAGGCCATTCTCTCGCCGACCCGGACGAGCTCCGGAAGCCTGgtaagttttg ... ttctttccagAGCAAAAGAACAAGTATGCTGTTCGCGATCCCATTGCTGCTTTCAAGAAGT
EST: CGGACGAGCTCCGGAAGCCTG AGCAAAAGAACAAGTATGCTGTTCGCGATCCCATTGCTGCTTTCAAGAAGTEST: gi|169105101|gb|FE505930.1|FE505930
genomic: CGGACGAGCTCCGGAAGCCTGgtaagttttg ... ttctttccagAGCAAAAGAACAAGTATGCTGTTCGCGATCCCATTGCTGCTTTCAAGAAGT
EST: CCGGTATAGAGGCCATTCTCTCGCCGACCCGGACGAGCTCCGGAAGCCTG AGCAAAAGAACAAGTATGCTGTTCGCGATCCCATTGCTGCTTTCAAGAAGT
genomic: CCGGTATAGAGGCCATTCTCTCGCCGACCCGGACGAGCTCCGGAAGCCTGgtaagttttg ... ttctttccagAGCAAAAGAACAAGTATGCTGTTCGCGATCCCATTGCTGCTTTCAAGAAGT
tttcttctttggttctttcgaggctaagcttttgctcttttttctttctttccagAGCAAAAGAACAAGTATGCTGTTCGCGATCCCATTGCTGCTTTCAAGAAGTACTTGCTGGAGAACGGACTGGCCAGTGAGGCGGACTTGAAAGCCATCGA
ctaagcttttgctctt CT-rich tract
ttttttctttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttttgttattctcttcgttttttgtggagtttcttctttggttctttcgaggctaagcttttgctcttttttctttctttccagAGCAAAAGAACAAGTATGCTGTTCGCGATCCCATTGCTGCTTTCAAGAAGTACTTGCTGGAGAACGGACTGGCCAGTGAGGCGGACTTGAAAGCCATCGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA