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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

tgatgcggtgagtccctccctctattttcaccttattctCGACATAG

Basic information

species Selaginella moellendorffii
transcript EFJ29991
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169048543|gb|FE454425.1|FE454425
EST:     TTGTCGCCGCCACAGCGGCCCCTGTCAAAGAATCTCC-CCTAAAGATCGC                         CGAC---G
genomic: TTGTCGCCGCCACAGCGGCCCCTGTCAAAGAATCTCCTCC-AAAGATCGCtgatgcggtg ... accttattctCGACATAG
EST: gi|169069942|gb|FE480376.1|FE480376
EST:     GTTGTCGCCGCCACAGCGGCCCCTGTCAAAGAATCTCCTCCAAAGATCGC                         TG--AT-G
genomic: GTTGTCGCCGCCACAGCGGCCCCTGTCAAAGAATCTCCTCCAAAGATCGCtgatgcggtg ... accttattctCGACATAG
EST: gi|169068681|gb|FE477984.1|FE477984
EST:     TTGTCGCCGCCACAGCGGCCCCTGTCAAAGAATCTCC-CCTAAAGATCGC                         CGAC---G
genomic: TTGTCGCCGCCACAGCGGCCCCTGTCAAAGAATCTCCTCC-AAAGATCGCtgatgcggtg ... accttattctCGACATAG
EST: gi|169042955|gb|FE452309.1|FE452309
EST:     TTGTCGCCGCCACAGCGGCCCCTGTCAAAGAATCTCC-CCTAAAGATCGC                         CGAC---G
genomic: TTGTCGCCGCCACAGCGGCCCCTGTCAAAGAATCTCCTCC-AAAGATCGCtgatgcggtg ... accttattctCGACATAG
EST: gi|169065002|gb|FE475074.1|FE475074
EST:     TTGTCGCCGCCACAGCGGCCCCTGTCAAAGAATCTCC-CCTAAAGATCGC                         CGAC---G
genomic: TTGTCGCCGCCACAGCGGCCCCTGTCAAAGAATCTCCTCC-AAAGATCGCtgatgcggtg ... accttattctCGACATAG
EST: gi|169098946|gb|FE501719.1|FE501719
EST:     TTGTCGCCGCCACAGCGGCCCCTGTCAAAGAATCTCC-CCTAAAGATCGC                         CGAC---G
genomic: TTGTCGCCGCCACAGCGGCCCCTGTCAAAGAATCTCCTCC-AAAGATCGCtgatgcggtg ... accttattctCGACATAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgatgcggtgagtccctccctctattttcaccttattctCGACATAG
                                           tccctccctctatttt  CT-rich tract
                                    tctatttt  TA-rich tract