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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtagttttttcatggtatttgcaagcctgcttatgcgtgtgttggtacagGGTACCGGGAAGAAAACATATGAAGAGCAGCTGAAGCAGTTGGAAATCAATTATCCCAACAAGGTTCGGGGGGTGGCCAAGTTCAACGTTCCTTTGGCGC

Basic information

species Selaginella moellendorffii
transcript EFJ24731
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169049787|gb|FE457801.1|FE457801
EST:     CAGAAGCAGTGGCCGATTTTATAGACGAAGACGTGCAACTGATTGTGCTG                         GGTACCGGGAAGAAAACATATGAAGAGCAGCTGAAGCAGTTGGAAATCAAT
genomic: CAGAAGCAGTGGCCGATTTTATAAACGAAGACGTGCAACTGATTGTGCTGgtttgtagtt ... gttggtacagGGTACCGGGAAGAAAACATATGAAGAGCAGCTGAAGCAGTTGGAAATCAAT
EST: gi|169026890|gb|FE434241.1|FE434241
EST:     CAGAAGCAGTGGCCGATTTTATAGACGAAGACGTGCAACTGATTGTGCTG                         GGTACCGGGAAGAAAACATATGAAGAGCAGCTGAAGCAGTTGGAAATCAAT
genomic: CAGAAGCAGTGGCCGATTTTATAAACGAAGACGTGCAACTGATTGTGCTGgtttgtagtt ... gttggtacagGGTACCGGGAAGAAAACATATGAAGAGCAGCTGAAGCAGTTGGAAATCAAT
EST: gi|169067448|gb|FE473968.1|FE473968
EST:     CAGAAGCAGTGGCCGATTTTATAGACGAAGACGTGCAACTGATTGTGCTG                         GGTACCGGGAAGAAAACATATGAAGAGCAGCTGAAGCAGTTGGAAATCAAT
genomic: CAGAAGCAGTGGCCGATTTTATAAACGAAGACGTGCAACTGATTGTGCTGgtttgtagtt ... gttggtacagGGTACCGGGAAGAAAACATATGAAGAGCAGCTGAAGCAGTTGGAAATCAAT
EST: gi|169030301|gb|FE440026.1|FE440026
EST:     CAGAAGCAGTGGCCGATTTTATAAACGAAGACGTGCAACTGATTGTGCTG                         GGTACCGGGAAGAAAACATATGAAGAGCAGCTGAAGCAGTTGGAAATCAAT
genomic: CAGAAGCAGTGGCCGATTTTATAAACGAAGACGTGCAACTGATTGTGCTGgtttgtagtt ... gttggtacagGGTACCGGGAAGAAAACATATGAAGAGCAGCTGAAGCAGTTGGAAATCAAT
EST: gi|169081218|gb|FE488753.1|FE488753
EST:     CAGAAGCAGTGGCCGATTTTATAGACGAAGACGTGCAACTGATTGTGCTG                         GGTACCGGGAAGAAAACATATGAAGAGCAGCTGAAGCAGTTGGAAATCAAT
genomic: CAGAAGCAGTGGCCGATTTTATAAACGAAGACGTGCAACTGATTGTGCTGgtttgtagtt ... gttggtacagGGTACCGGGAAGAAAACATATGAAGAGCAGCTGAAGCAGTTGGAAATCAAT
EST: gi|169078316|gb|FE490349.1|FE490349
EST:     ACGAAGACGTGCAACTGATTGTGCTG                         GNGTACCGGGAAGAAAACATATGAAGAGCAGCTGAAGCAGTTGGAAATCAA
genomic: ACGAAGACGTGCAACTGATTGTGCTGgtttgtagtt ... gttggtacagG-GTACCGGGAAGAAAACATATGAAGAGCAGCTGAAGCAGTTGGAAATCAA
EST: gi|169047392|gb|FE456225.1|FE456225
EST:     CAGAAGCAGTGGCCGATTTTATAGACGAAGACGTGCAACTGATTGTGCTG                         GGTACCGGGAAGAAAACATATGAAGAGCAGCTGAAGCAGTTGGAAATCAAT
genomic: CAGAAGCAGTGGCCGATTTTATAAACGAAGACGTGCAACTGATTGTGCTGgtttgtagtt ... gttggtacagGGTACCGGGAAGAAAACATATGAAGAGCAGCTGAAGCAGTTGGAAATCAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttgtagttttttcatggtatttgcaagcctgcttatgcgtgtgttggtacagGGTACCGGGAAGAAAACATATGAAGAGCAGCTGAAGCAGTTGGAAATCAATTATCCCAACAAGGTTCGGGGGGTGGCCAAGTTCAACGTTCCTTTGGCGC
       tagtttttt  TA-rich tract