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gtaagcgcgttaatcgaagcgttctctcccttccaagttccttttttacaagtgtgtatagctgagcgaaatggtcgtcgtttagtttagaatggcaggaatcgtttacttctagcgctctaatgcatagttttttatatatgcagATACCTATAGTCTCATCCACAGGCGGCTTGGTTGATACTGTCAAAGAAGGTTTCACAGGTTTCCACATGGGTGCGTTTAACGTTCAC
species | Selaginella moellendorffii |
transcript | EFJ24731 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GATTTGAGCCATGCGGACTCATCCAGCTTCACGCAATGCGATATGGAACG ATACCTATAGTCTCATCCACAGGCGGTTTGGTTGATACTGTCAAAGAAGGTEST: gi|169026890|gb|FE434241.1|FE434241
genomic: GATTTGAGCCATGCGGACTCATCCAGCTTCACGCAATGCGATATGGAACGgtaagcgcgt ... atatatgcagATACCTATAGTCTCATCCACAGGCGGCTTGGTTGATACTGTCAAAGAAGGT
EST: GATTTGAGCCATGCGGACTCATCCAGCTTCACGCAATGCGATATGGAACG ATACCTATAGTCTCATCCACAGGCGGTTTGGTTGATACTGTCAAAGAAGGTEST: gi|169067448|gb|FE473968.1|FE473968
genomic: GATTTGAGCCATGCGGACTCATCCAGCTTCACGCAATGCGATATGGAACGgtaagcgcgt ... atatatgcagATACCTATAGTCTCATCCACAGGCGGCTTGGTTGATACTGTCAAAGAAGGT
EST: GATTTGAGCCATGCGGACTCATCCAGCTTCACGCAATGCGATATGGAACG ATACCTATAGTCTCATCCACAGGCGGTTTGGTTGATACTGTCAAAGAAGGTEST: gi|169030301|gb|FE440026.1|FE440026
genomic: GATTTGAGCCATGCGGACTCATCCAGCTTCACGCAATGCGATATGGAACGgtaagcgcgt ... atatatgcagATACCTATAGTCTCATCCACAGGCGGCTTGGTTGATACTGTCAAAGAAGGT
EST: GATTTGAGCCATGCGGACTCATCCAGCTTCACGCAATGCGATATGGAACG ATACCTATAGTCTCATCCACAGGCGGCTTGGTTGATACTGTCAAAGAAGGTEST: gi|169081218|gb|FE488753.1|FE488753
genomic: GATTTGAGCCATGCGGACTCATCCAGCTTCACGCAATGCGATATGGAACGgtaagcgcgt ... atatatgcagATACCTATAGTCTCATCCACAGGCGGCTTGGTTGATACTGTCAAAGAAGGT
EST: GATTTGAGCCATGCGGACTCATCCAGCTTCACGCAATGCGATATGGAACG ATACCTATAGTCTCATCCACAGGCGGTTTGGTTGATACTGTCAAAGAAGGTEST: gi|169078316|gb|FE490349.1|FE490349
genomic: GATTTGAGCCATGCGGACTCATCCAGCTTCACGCAATGCGATATGGAACGgtaagcgcgt ... atatatgcagATACCTATAGTCTCATCCACAGGCGGCTTGGTTGATACTGTCAAAGAAGGT
EST: GATTTGAGCCATGCGGACTCATCCAGCTTCACGCAATGCGATATGGAACG ATACCTATAGTCTCATCCACAGGCGGTTTGGTTGATACTGTCAAAGAAGGTEST: gi|169047392|gb|FE456225.1|FE456225
genomic: GATTTGAGCCATGCGGACTCATCCAGCTTCACGCAATGCGATATGGAACGgtaagcgcgt ... atatatgcagATACCTATAGTCTCATCCACAGGCGGCTTGGTTGATACTGTCAAAGAAGGT
EST: GATTTGAGCCATGCGGACTCATCCAGCTTCACGCAATGCGATATGGAACG ATACCTATAGTCTCATCCACAGGCGGTTTGGTTGATACTGTCAAAGAAGGT
genomic: GATTTGAGCCATGCGGACTCATCCAGCTTCACGCAATGCGATATGGAACGgtaagcgcgt ... atatatgcagATACCTATAGTCTCATCCACAGGCGGCTTGGTTGATACTGTCAAAGAAGGT
atggcaggaatcgtttacttctagcgctctaatgcatagttttttatatatgcagATACCTATAGTCTCATCCACAGGCGGCTTGGTTGATACTGTCAAAGAAGGTTTCACAGGTTTCCACATGGGTGCGTTTAACGTTCAC
ctctaat putative branch site (score: 24)
ttttttat putative PPT
taatgcatagtttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcgcgttaatcgaagcgttctctcccttccaagttccttttttacaagtgtgtatagctgagcgaaatggtcgtcgtttagtttagaatggcaggaatcgtttacttctagcgctctaatgcatagttttttatatatgcagATACCTATAGTCTCATCCACAGGCGGCTTGGTTGATACTGTCAAAGAAGGTTTCACAGGTTTCCACATGGGTGCGTTTAACGTTCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG