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gtattgttcttggctctctttttatttctttcctttgctggattcagcgtgagttctatcagGGACCCGCGAGGAGATGGGAGGAAGTGCTCCTCAACCTTGGAGTGGAAGGCAGCCGTCCAGGCCAGGAGGGAGAGGAGATTGCTCCTCAGGCAAAATATA
species | Selaginella moellendorffii |
transcript | EFJ24731 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GCTTTCGCACCATGATCCAAGCTTGCATGTCACAGGATCTGTCATGGAAG GGTCCTGCGAGGAGATGGGAGGAAGTGCTTCTCAACCTTGGAGTGGAAGGCEST: gi|70670758|gb|DN839335.1|DN839335
genomic: GCTTTCGCACCATGATCCAAGCTTGCATGTCACAGGATCTGTCATGGAAGgtattgttct ... gttctatcagGGACCCGCGAGGAGATGGGAGGAAGTGCTCCTCAACCTTGGAGTGGAAGGC
EST: GCTTTCGCACCATGATCCAAGCTTGCATGTCACAGGATCTGTCATGGAAG GGTCCTGCGAGGAGATGGGAGGAAGTGCTTCTCAACCTTGGAGTGGAAGGCEST: gi|169026890|gb|FE434241.1|FE434241
genomic: GCTTTCGCACCATGATCCAAGCTTGCATGTCACAGGATCTGTCATGGAAGgtattgttct ... gttctatcagGGACCCGCGAGGAGATGGGAGGAAGTGCTCCTCAACCTTGGAGTGGAAGGC
EST: GCTTTCGCACCATGATCCAAGCTTGCATGTCACAGGATCTGTCATGGAAG GGTCCTGCGAGGAGATGGGAGGAAGTGCTTCTCAACCTTGGAGTGGAAGGCEST: gi|169067448|gb|FE473968.1|FE473968
genomic: GCTTTCGCACCATGATCCAAGCTTGCATGTCACAGGATCTGTCATGGAAGgtattgttct ... gttctatcagGGACCCGCGAGGAGATGGGAGGAAGTGCTCCTCAACCTTGGAGTGGAAGGC
EST: GCTTTCGCACCATGATCCAAGCTTGCATGTCACAGGATCTGTCATGGAAG GGTCCTGCGAGGAGATGGGAGGAAGTGCTTCTCAACCTTGGAGTGGAAGGCEST: gi|169030301|gb|FE440026.1|FE440026
genomic: GCTTTCGCACCATGATCCAAGCTTGCATGTCACAGGATCTGTCATGGAAGgtattgttct ... gttctatcagGGACCCGCGAGGAGATGGGAGGAAGTGCTCCTCAACCTTGGAGTGGAAGGC
EST: GCTTTCGCACCATGATCCAAGCTTGCATGTCACAGGATCTGTCATGGAAG GGACCCGCGAGGAGATGGGAGGAAGTGCTCCTCAACCTTGGAGTGGAAGGCEST: gi|169081218|gb|FE488753.1|FE488753
genomic: GCTTTCGCACCATGATCCAAGCTTGCATGTCACAGGATCTGTCATGGAAGgtattgttct ... gttctatcagGGACCCGCGAGGAGATGGGAGGAAGTGCTCCTCAACCTTGGAGTGGAAGGC
EST: GCTTTCGCACCATGATCCAAGCTTGCATGTCACAGGATCTGTCATGGAAG GGTCCTGCGAGGAGATGGGAGGAAGTGCTTCTCAACCTTGGAGTGGAAGGCEST: gi|169078316|gb|FE490349.1|FE490349
genomic: GCTTTCGCACCATGATCCAAGCTTGCATGTCACAGGATCTGTCATGGAAGgtattgttct ... gttctatcagGGACCCGCGAGGAGATGGGAGGAAGTGCTCCTCAACCTTGGAGTGGAAGGC
EST: GCTTTCGCACCATGATCCAAGCTTGCATGTCACAGGATCTGTCATGGAAG GGTCCTGCGAGGAGATGGGAGGAAGTGCTTCTCAACCTTGGAGTGGAAGGCEST: gi|169047392|gb|FE456225.1|FE456225
genomic: GCTTTCGCACCATGATCCAAGCTTGCATGTCACAGGATCTGTCATGGAAGgtattgttct ... gttctatcagGGACCCGCGAGGAGATGGGAGGAAGTGCTCCTCAACCTTGGAGTGGAAGGC
EST: GCTTTCGCACCATGATCCAAGCTTGCATGTCACAGGATCTGTCATGGAAG GGTCCTGCGAGGAGATGGGAGGAAGTGCTTCTCAACCTTGGAGTGGAAGGC
genomic: GCTTTCGCACCATGATCCAAGCTTGCATGTCACAGGATCTGTCATGGAAGgtattgttct ... gttctatcagGGACCCGCGAGGAGATGGGAGGAAGTGCTCCTCAACCTTGGAGTGGAAGGC
tcttggctctctttttatttctttcctttgctggattcagcgtgagttctatcagGGACCCGCGAGGAGATGGGAGGAAGTGCTCCTCAACCTTGGAGTGGAAGGCAGCCGTCCAGGCCAGGAGGGAGAGGAGATTGCTCCTCAGGCAAAATATA
ttctatc CT-rich tract
tctttttatttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattgttcttggctctctttttatttctttcctttgctggattcagcgtgagttctatcagGGACCCGCGAGGAGATGGGAGGAAGTGCTCCTCAACCTTGGAGTGGAAGGCAGCCGTCCAGGCCAGGAGGGAGAGGAGATTGCTCCTCAGGCAAAATATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC