1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtacgcgagatttttctttcgaattttttttttcctttctttttgtttcgctaggccatgacgatctgactcacagGTTAGCCACTATCCCAAGAACTACGCACAGCAACGCATCGCCGGACAAGGACTAAACGAGGAAGAGCTCAAACGGAACCCA
species | Selaginella moellendorffii |
transcript | EFJ23996 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CACCAAGCAACACTCCCGGCGTGGCGTTACTAGACATGTGTAGCAGCTGG GTTAGCCACTATCCCAAGAACTACGCACAGCAACGCATCGCCGGACAAGGAEST: gi|70669162|gb|DN837739.1|DN837739
genomic: CACCAAGCAACACTCCCGGCGTGGCGTTACTAGACATGTGTAGCAGCTGGgtacgcgaga ... tgactcacagGTTAGCCACTATCCCAAGAACTACGCACAGCAACGCATCGCCGGACAAGGA
EST: CACCAAGCAACACTCCCGGCGTGGCGTTACTAGACATGTGTAGCAGCTGG GTTAGCCACTATCCCAAGAACTACGCACAGCAACGCATCGCCGGACAAGGAEST: gi|169069452|gb|FE480549.1|FE480549
genomic: CACCAAGCAACACTCCCGGCGTGGCGTTACTAGACATGTGTAGCAGCTGGgtacgcgaga ... tgactcacagGTTAGCCACTATCCCAAGAACTACGCACAGCAACGCATCGCCGGACAAGGA
EST: CACCAAGCAACACTCCCGGCGTGGCGTTACTAGACATGTGTAGCAGCTGG GTTAGCCACTATCCCAAGAACTACGCACAGCAACGCATCGCCGGACAAGGA
genomic: CACCAAGCAACACTCCCGGCGTGGCGTTACTAGACATGTGTAGCAGCTGGgtacgcgaga ... tgactcacagGTTAGCCACTATCCCAAGAACTACGCACAGCAACGCATCGCCGGACAAGGA
aattttttttttcctttctttttgtttcgctaggccatgacgatctgactcacagGTTAGCCACTATCCCAAGAACTACGCACAGCAACGCATCGCCGGACAAGGACTAAACGAGGAAGAGCTCAAACGGAACCCA
atctgac putative branch site (score: 17)
tttcttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgcgagatttttctttcgaattttttttttcctttctttttgtttcgctaggccatgacgatctgactcacagGTTAGCCACTATCCCAAGAACTACGCACAGCAACGCATCGCCGGACAAGGACTAAACGAGGAAGAGCTCAAACGGAACCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA