1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaagaattcccggatatttcgatcgatctccacaggatttctcccccttctctccagATTCTAAGAAACGTGGGGTGGCCGGAGGAATTCCCCTTCAAGAAGGAAGATTTCCAGCGTTATGACGA
species | Selaginella moellendorffii |
transcript | EFJ23996 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGGATCCAGCGTTTGCCGCCAGGTCCAAGAAGAGATCCGAGGCAGAGGAG ATTCTAAGAAACGTGGGGTGGCCGGAGGAATTCCCCTTCAAGAAGGAAGATEST: gi|70669162|gb|DN837739.1|DN837739
genomic: GGGATCCAGCGTTTGCCGCCAGGTCCAAGAAGAGATCCGAGGCAGAGGAGgtaagaattc ... ttctctccagATTCTAAGAAACGTGGGGTGGCCGGAGGAATTCCCCTTCAAGAAGGAAGAT
EST: GGGATCCAGCGTTTGCCGCCAGGTCCAAGAAGAGATCCGAGGCAGAGGAG ATTCTAAGAAACGTGGGGTGGCCGGAGGAATTCCCCTTCAAGAAGGAAGATEST: gi|169069452|gb|FE480549.1|FE480549
genomic: GGGATCCAGCGTTTGCCGCCAGGTCCAAGAAGAGATCCGAGGCAGAGGAGgtaagaattc ... ttctctccagATTCTAAGAAACGTGGGGTGGCCGGAGGAATTCCCCTTCAAGAAGGAAGAT
EST: GGGATCCAGCGTTTGCCGCCAGGTCCAAGAAGAGATCCGAGGCAGAGGAG ATTCTAAGAAACGTGGGGTGGCCGGAGGAATTCCCCTTCAAGAAGGAAGAT
genomic: GGGATCCAGCGTTTGCCGCCAGGTCCAAGAAGAGATCCGAGGCAGAGGAGgtaagaattc ... ttctctccagATTCTAAGAAACGTGGGGTGGCCGGAGGAATTCCCCTTCAAGAAGGAAGAT
agaattcccggatatttcgatcgatctccacaggatttctcccccttctctccagATTCTAAGAAACGTGGGGTGGCCGGAGGAATTCCCCTTCAAGAAGGAAGATTTCCAGCGTTATGACGA
tttctcccccttctct CT-rich tract
atattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagaattcccggatatttcgatcgatctccacaggatttctcccccttctctccagATTCTAAGAAACGTGGGGTGGCCGGAGGAATTCCCCTTCAAGAAGGAAGATTTCCAGCGTTATGACGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA