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gtaagtcacagaaaaaaccggagttcctttggagctgacacgaactaacggttttctcgtttggaaatttcttttctcgcagTTGGGAGGAAGCGGTCTGGCAGTTTTTTGGAGAAATCGTGCTCTTCCCAAAGACGACAAGGACGATTTCAAGGAATAAGGAAGAACTTTTCACAAACAAG
species | Selaginella moellendorffii |
transcript | EFJ23843 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GTAATCCTCTAGTCGCTGTGCCATCGGCCGTGAGCGTCGTCTGTATGGCT TTGGGAGGAAGCGGTCTGGCAGTTTTTTGGAGAAATCGTGCTCTTCCCAAAEST: gi|169020191|gb|FE428240.1|FE428240
genomic: GTAATCCTCTAGTCGCTGTGCCATCGGCCGTGAGCGTCGTCTGTATGGCTgtaagtcaca ... tttctcgcagTTGGGAGGAAGCGGTCTGGCAGTTTTTTGGAGAAATCGTGCTCTTCCCAAA
EST: GTAATCCTCTAGTCGCTGTGCCATCGGCCGTGAGCGTCGTCTGTATGGCT TTGGGAGGAAGCGGTCTGGCAGTTTTTTGGAGAAATCGTGCTCTTCCCAAAEST: gi|169081998|gb|FE486441.1|FE486441
genomic: GTAATCCTCTAGTCGCTGTGCCATCGGCCGTGAGCGTCGTCTGTATGGCTgtaagtcaca ... tttctcgcagTTGGGAGGAAGCGGTCTGGCAGTTTTTTGGAGAAATCGTGCTCTTCCCAAA
EST: GTAATCCTCTAGTCGCTGTGCCATCGGCCGTGAGCGTCGTCTGTATGGCT TTGGGAGGAAGCGGTCTGGCAGTTTTTTGGAGAAATCGTGCTCTTCCCAAAEST: gi|169110751|gb|FE509312.1|FE509312
genomic: GTAATCCTCTAGTCGCTGTGCCATCGGCCGTGAGCGTCGTCTGTATGGCTgtaagtcaca ... tttctcgcagTTGGGAGGAAGCGGTCTGGCAGTTTTTTGGAGAAATCGTGCTCTTCCCAAA
EST: GTAATCCTCTAGTCGCTGTGCCATCGGCCGTGAGCGTCGTCTGTATGGCT TTGGGAGGAAGCGGTCTGGCAGTTTTTTGGAGAAATCGTGCTCTTCCCAAAEST: gi|169110752|gb|FE509313.1|FE509313
genomic: GTAATCCTCTAGTCGCTGTGCCATCGGCCGTGAGCGTCGTCTGTATGGCTgtaagtcaca ... tttctcgcagTTGGGAGGAAGCGGTCTGGCAGTTTTTTGGAGAAATCGTGCTCTTCCCAAA
EST: GTAATCCTCTAGTCGCTGTGCCATCGGCCGTGAGCGTCGTCTGTATGGCT TTGGGAGGAAGCGGTCTGGCAGTTTTTTGGAGAAATCGTGCTCTTCCCAAAEST: gi|169048787|gb|FE456606.1|FE456606
genomic: GTAATCCTCTAGTCGCTGTGCCATCGGCCGTGAGCGTCGTCTGTATGGCTgtaagtcaca ... tttctcgcagTTGGGAGGAAGCGGTCTGGCAGTTTTTTGGAGAAATCGTGCTCTTCCCAAA
EST: GTAATCCTCTAGTCGCTGTGCCATCGGCCGTGAGCGTCGTCTGTATGGCT TTGGGAGGAAGCGGTCTGGCAGTTTTTTGGAGAAATCGTGCTCTTCCCAAAEST: gi|169073190|gb|FE481032.1|FE481032
genomic: GTAATCCTCTAGTCGCTGTGCCATCGGCCGTGAGCGTCGTCTGTATGGCTgtaagtcaca ... tttctcgcagTTGGGAGGAAGCGGTCTGGCAGTTTTTTGGAGAAATCGTGCTCTTCCCAAA
EST: GTAATCCTCTAGTCGCTGTGCCATCGGCCGTGAGCGTCGTCTGTATGGCT TTGGGAGGAAGCGGTCTGGCAGTTTTTTGGAGAAATCGTGCTCTTCCCAAA
genomic: GTAATCCTCTAGTCGCTGTGCCATCGGCCGTGAGCGTCGTCTGTATGGCTgtaagtcaca ... tttctcgcagTTGGGAGGAAGCGGTCTGGCAGTTTTTTGGAGAAATCGTGCTCTTCCCAAA
tttggagctgacacgaactaacggttttctcgtttggaaatttcttttctcgcagTTGGGAGGAAGCGGTCTGGCAGTTTTTTGGAGAAATCGTGCTCTTCCCAAAGACGACAAGGACGATTTCAAGGAATAAGGAAGAACTTTTCACAAACAAG
aactaac putative branch site (score: 34)
tttcttttctcgc putative PPT
aaatttctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtcacagaaaaaaccggagttcctttggagctgacacgaactaacggttttctcgtttggaaatttcttttctcgcagTTGGGAGGAAGCGGTCTGGCAGTTTTTTGGAGAAATCGTGCTCTTCCCAAAGACGACAAGGACGATTTCAAGGAATAAGGAAGAACTTTTCACAAACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC