1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtgagtcttatagaacttaattctttctttttcctagatgtaaaggctggaatgctttcagATTGGTCAAGTGTCCGAGGTCCTTGTCACCCAAGGCACGCAGCTCATATTTCCGGTGGCACTCCTCCACGCCGCCGCGTTTCTGCTGGGCTACTGGCTTT
species | Selaginella moellendorffii |
transcript | EFJ23843 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TGACACCTCTCGTGGGGGTTATTCTGACAACACTTCTCTGCGCTAGTCCC ATTGGTCAAGTGTCCGAGGTCCTTGTCACCCAAGGCACGCAGCTCATATTTEST: gi|169020191|gb|FE428240.1|FE428240
genomic: TGACACCTCTCGTGGGGGTTATTCTGACAACACTTCTCTGCGCTAGTCCCgtgagtctta ... atgctttcagATTGGTCAAGTGTCCGAGGTCCTTGTCACCCAAGGCACGCAGCTCATATTT
EST: TGACACCTCTCGTGGGGGTTATTCTGACAACACTTCTCTGCGCTAGTCCC ATTGGTCAAGTGTCCGAGGTCCTTGTCACCCAAGGCACGCAGCTCATATTTEST: gi|169081998|gb|FE486441.1|FE486441
genomic: TGACACCTCTCGTGGGGGTTATTCTGACAACACTTCTCTGCGCTAGTCCCgtgagtctta ... atgctttcagATTGGTCAAGTGTCCGAGGTCCTTGTCACCCAAGGCACGCAGCTCATATTT
EST: TGACACCTCTCGTGGGGGTTATTCTGACAACACTTCTCTGCGCTAGTCCC ATTGGTCAAGTGTCCGAGGTCCTTGTCACCCAAGGCACGCAGCTCATATTTEST: gi|169048787|gb|FE456606.1|FE456606
genomic: TGACACCTCTCGTGGGGGTTATTCTGACAACACTTCTCTGCGCTAGTCCCgtgagtctta ... atgctttcagATTGGTCAAGTGTCCGAGGTCCTTGTCACCCAAGGCACGCAGCTCATATTT
EST: TGACACCTCTCGTGGGGGTTATTCTGACAACACTTCTCTGCGCTAGTCCC ATTGGTCAAGTGTCCGAGGTCCTTGTCACCCAAGGCACGCAGCTCATATTTEST: gi|169073190|gb|FE481032.1|FE481032
genomic: TGACACCTCTCGTGGGGGTTATTCTGACAACACTTCTCTGCGCTAGTCCCgtgagtctta ... atgctttcagATTGGTCAAGTGTCCGAGGTCCTTGTCACCCAAGGCACGCAGCTCATATTT
EST: TGACACCTCTCGTGGGGGTTATTCTGACAACACTTCTCTGCGCTAGTCCC ATTGGTCAAGTGTCCGAGGTCCTTGTCACCCAAGGCACGCAGCTCATATTT
genomic: TGACACCTCTCGTGGGGGTTATTCTGACAACACTTCTCTGCGCTAGTCCCgtgagtctta ... atgctttcagATTGGTCAAGTGTCCGAGGTCCTTGTCACCCAAGGCACGCAGCTCATATTT
cttatagaacttaattctttctttttcctagatgtaaaggctggaatgctttcagATTGGTCAAGTGTCCGAGGTCCTTGTCACCCAAGGCACGCAGCTCATATTTCCGGTGGCACTCCTCCACGCCGCCGCGTTTCTGCTGGGCTACTGGCTTT
acttaat putative branch site (score: 16)
tgctttc putative PPT
ttaattctttcttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtcttatagaacttaattctttctttttcctagatgtaaaggctggaatgctttcagATTGGTCAAGTGTCCGAGGTCCTTGTCACCCAAGGCACGCAGCTCATATTTCCGGTGGCACTCCTCCACGCCGCCGCGTTTCTGCTGGGCTACTGGCTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC