1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GCAGGGAGCGCCGGGATTCACCGACGATCGTGGCGTCCAGCGACGGCGGAGGCGAGATTGGGATTTGGAATCGCCAAGCCCGGCGAGGGAGCAGTCGCAGgttcgtccttcttgtttctgtgagttcttcgctggattcctggtgaatgcggggcgtcgcattcgatatttcgctctttctcactctggatctgtctgtttttctcag
species | Selaginella moellendorffii |
transcript | EFJ23843 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GGCGAGATTGGGATTTGGAATCGCCAAGCCCGGCGAGGGAGCAGTCGCAG GGATGAAGGCTGGATCTTTCTCTCTCGTGAACACGCCGACGCATCGATCACEST: gi|169036983|gb|FE445022.1|FE445022
genomic: GGCGAGATTGGGATTTGGAATCGCCAAGCCCGGCGAGGGAGCAGTCGCAGgttcgtcctt ... tttttctcagGGATGAAGGCTGGATCTTTCTCTCTCGTGAACACGCCGACGCATCGATCAC
EST: GGCGAGATTGGGATTTGGAATCGCCAAGCCCGGCGATGGAGCAGTCGCAG GGATGAAGGCTGGATCTGTCTCTCTCGTGAACACGCCGACGCATCAATCACEST: gi|169072613|gb|FE481279.1|FE481279
genomic: GGCGAGATTGGGATTTGGAATCGCCAAGCCCGGCGAGGGAGCAGTCGCAGgttcgtcctt ... tttttctcagGGATGAAGGCTGGATCTTTCTCTCTCGTGAACACGCCGACGCATCGATCAC
EST: GGCGAGATTGGGATTTGGAATCGCCAAGCCCGGCGAGGGAGCAGTCGCAG GGATGAAGGCTGGATCTTTCTCTCTCGTGAACACGCCGACGCATCGATCACEST: gi|169077782|gb|FE485460.1|FE485460
genomic: GGCGAGATTGGGATTTGGAATCGCCAAGCCCGGCGAGGGAGCAGTCGCAGgttcgtcctt ... tttttctcagGGATGAAGGCTGGATCTTTCTCTCTCGTGAACACGCCGACGCATCGATCAC
EST: GGCGAGATTGGGATTTGGAATCGCCAAGCCCGGCGATGGAGCAGTCGCAG GGATGAAGGCTGGATCTGTCTCTCTCGTGAACACGCCGACGCATCAATCACEST: gi|169048788|gb|FE456607.1|FE456607
genomic: GGCGAGATTGGGATTTGGAATCGCCAAGCCCGGCGAGGGAGCAGTCGCAGgttcgtcctt ... tttttctcagGGATGAAGGCTGGATCTTTCTCTCTCGTGAACACGCCGACGCATCGATCAC
EST: GGCGAGATTGGGATTTGGAATCGCCAAGCCCGGCGAGGGAGCAGTCGCAG GGATGAAGGCTGGATCTTTCTCTCTCGTGAACACGCCGACGCATCGATCACEST: gi|169059195|gb|FE467197.1|FE467197
genomic: GGCGAGATTGGGATTTGGAATCGCCAAGCCCGGCGAGGGAGCAGTCGCAGgttcgtcctt ... tttttctcagGGATGAAGGCTGGATCTTTCTCTCTCGTGAACACGCCGACGCATCGATCAC
EST: GGCGAGATTGGGATTTGGAATCGCCAAGCCCGGCGATGGAGCAGTCGCAG GGATGAAGGCTGGATCTGTCTCTCTCGTGAACACGCCGACGCATCAATCACEST: gi|169105008|gb|FE506604.1|FE506604
genomic: GGCGAGATTGGGATTTGGAATCGCCAAGCCCGGCGAGGGAGCAGTCGCAGgttcgtcctt ... tttttctcagGGATGAAGGCTGGATCTTTCTCTCTCGTGAACACGCCGACGCATCGATCAC
EST: GGCGAGATTGGGATTTGGAATCGCCAAGCCCGGCGATGGAGCAGTCGCAG GGATGAAGGCTGGATCTGTCTCTCTCGTGAACACGCCGACGCATCAATCACEST: gi|169073204|gb|FE481033.1|FE481033
genomic: GGCGAGATTGGGATTTGGAATCGCCAAGCCCGGCGAGGGAGCAGTCGCAGgttcgtcctt ... tttttctcagGGATGAAGGCTGGATCTTTCTCTCTCGTGAACACGCCGACGCATCGATCAC
EST: GGCGAGATTGGGATTTGGAATCGCCAAGCCCGGCGAGGGAGCAGTCGCAG GGATGAAGGCTGGATCTTTCTCTCTCGTGAACACGCCGACGCATCGATCACEST: gi|169039692|gb|FE448626.1|FE448626
genomic: GGCGAGATTGGGATTTGGAATCGCCAAGCCCGGCGAGGGAGCAGTCGCAGgttcgtcctt ... tttttctcagGGATGAAGGCTGGATCTTTCTCTCTCGTGAACACGCCGACGCATCGATCAC
EST: GGCGAGATTGGGATTTGGAATCGCCAAGCCCGGCGATGGAGCAGTCGCAG GGATGAAGGCTGGATCTGTCTCTCTCGTGAACACGCCGACGCATCAATCAC
genomic: GGCGAGATTGGGATTTGGAATCGCCAAGCCCGGCGAGGGAGCAGTCGCAGgttcgtcctt ... tttttctcagGGATGAAGGCTGGATCTTTCTCTCTCGTGAACACGCCGACGCATCGATCAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAGGGAGCGCCGGGATTCACCGACGATCGTGGCGTCCAGCGACGGCGGAGGCGAGATTGGGATTTGGAATCGCCAAGCCCGGCGAGGGAGCAGTCGCAGgttcgtccttcttgtttctgtgagttcttcgctggattcctggtgaatgcggggcgtcgcattcgatatttcgctctttctcactctggatctgtctgtttttctcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG