1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgaaagttcatgaagaaaaatcaatcctgtatcaagcttctttgttttgtttcagAGCTGGAGGATTGCTAGACAAAGAAGGGGGTGTTCGAGAGCTTCTAGTTGGGAGAAATGATGAGCTCTTGAAGACTGACACTAAATCTCTTCCCAGATCG
species | Selaginella moellendorffii |
transcript | EFJ23715 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AAGGCAGAGGAATATCTTTCAGAATCAGGCATTCCTTACACGATAATCAG AGCTGGAGGATTGCTAGACAAAGAAGGGGGTGTTCGAGAGCTTCTAGTTGGEST: gi|169067557|gb|FE475793.1|FE475793
genomic: AAGGCAGAGGAATATCTTTCAGAATCAGGCATTCCTTACACGATAATCAGgtgaaagttc ... tttgtttcagAGCTGGAGGATTGCTAGACAAAGAAGGGGGTGTTCGAGAGCTTCTAGTTGG
EST: AAGGCAGAGGAATATCTTTCAGAATCAGGCATTCCTTACACGATAATCAG AGCTGGAGGATTGCTAGACAAAGAAGGGGGTGTTCGAGAGCTTCTAGTTGG
genomic: AAGGCAGAGGAATATCTTTCAGAATCAGGCATTCCTTACACGATAATCAGgtgaaagttc ... tttgtttcagAGCTGGAGGATTGCTAGACAAAGAAGGGGGTGTTCGAGAGCTTCTAGTTGG
tgaaagttcatgaagaaaaatcaatcctgtatcaagcttctttgttttgtttcagAGCTGGAGGATTGCTAGACAAAGAAGGGGGTGTTCGAGAGCTTCTAGTTGGGAGAAATGATGAGCTCTTGAAGACTGACACTAAATCTCTTCCCAGATCG
cttctttgttttgttt CT-rich tract
aaaaatcaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaaagttcatgaagaaaaatcaatcctgtatcaagcttctttgttttgtttcagAGCTGGAGGATTGCTAGACAAAGAAGGGGGTGTTCGAGAGCTTCTAGTTGGGAGAAATGATGAGCTCTTGAAGACTGACACTAAATCTCTTCCCAGATCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA