1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaaggaaaaacatgtttttcttcaacaagagttttacaaaaaagctttttgtagATCTGGAAGAGAAAGGCAGAGGAATATCTTTCAGAATCAGGCATTCCTTACACGATAATCAG
species | Selaginella moellendorffii |
transcript | EFJ23715 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GAACTGACGATAATCATCCTCTCAATTCTCTAGGAAACGGGAAAATCCTG ATCTGGAAGAGAAAGGCAGAGGAATATCTTTCAGAATCAGGCATTCCTTACEST: gi|169067557|gb|FE475793.1|FE475793
genomic: GAACTGACGATAATCATCCTCTCAATTCTCTAGGAAACGGGAAAATCCTGgtaaggaaaa ... ctttttgtagATCTGGAAGAGAAAGGCAGAGGAATATCTTTCAGAATCAGGCATTCCTTAC
EST: GAACTGACGATAATCATCCTCTCAATTCTCTAGGAAACGGGAAAATCCTG ATCTGGAAGAGAAAGGCAGAGGAATATCTTTCAGAATCAGGCATTCCTTAC
genomic: GAACTGACGATAATCATCCTCTCAATTCTCTAGGAAACGGGAAAATCCTGgtaaggaaaa ... ctttttgtagATCTGGAAGAGAAAGGCAGAGGAATATCTTTCAGAATCAGGCATTCCTTAC
gtaaggaaaaacatgtttttcttcaacaagagttttacaaaaaagctttttgtagATCTGGAAGAGAAAGGCAGAGGAATATCTTTCAGAATCAGGCATTCCTTACACGATAATCAG
ctttttgt CT-rich tract
aaaaacatgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaggaaaaacatgtttttcttcaacaagagttttacaaaaaagctttttgtagATCTGGAAGAGAAAGGCAGAGGAATATCTTTCAGAATCAGGCATTCCTTACACGATAATCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA