1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TATTCCAGCTGTTCAAGAGATCGTAAAGAGAATGACTGGCAGGGCCCCAAACTTGACTGTCAATCCCGATGAGGTTGTTGCATTAGGAGCTGCTGTTCAGgtaaaagttccggtaattggtcttggtactttactgagtattttaatttcag
species | Selaginella moellendorffii |
transcript | EFJ23703 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: ACTTGACTGTCAATCCCGATGAGGTTGTTGCATTAGGAGCTGCTGTTCAG GCCGGTGTTCTGGCTGGAGAAGTCAGTGATCTAGTGTTACTGGACGTGACTEST: gi|169021042|gb|FE430651.1|FE430651
genomic: ACTTGACTGTCAATCCCGATGAGGTTGTTGCATTAGGAGCTGCTGTTCAGgtaaaagttc ... ttaatttcagGCCGGTGTTCTGGCTGGAGAAGTCAGTGATCTAGTGTTACTGGACGTGACT
EST: ACTTGACTGTCAATCCCGATGAGGTTGTTGCATTAGGAGCTGCTGTTCAG GCCGGTGTTCTGGCTGGAGAAGTCAGTGATCTAGTGTTACTGGACGTGACTEST: gi|169029193|gb|FE439399.1|FE439399
genomic: ACTTGACTGTCAATCCCGATGAGGTTGTTGCATTAGGAGCTGCTGTTCAGgtaaaagttc ... ttaatttcagGCCGGTGTTCTGGCTGGAGAAGTCAGTGATCTAGTGTTACTGGACGTGACT
EST: ACTTGACTGTCAATCCCGATGAGGTTGTTGCATTAGGAGCTGCTGTTCAG GCCCGGTGTTCTGEST: gi|169092853|gb|FE494978.1|FE494978
genomic: ACTTGACTGTCAATCCCGATGAGGTTGTTGCATTAGGAGCTGCTGTTCAGgtaaaagttc ... ttaatttcagGCC-GGTGTTCTG
EST: ACTTGACTGTCAATCCCGATGAGGTTGTTGCATTAGGAGCTGCTGTTCAG GCCGGTGTTCTGGCTGGAGAAGTCAGTGATCTAGTGTTACTGGACGTGACTEST: gi|169051045|gb|FE458215.1|FE458215
genomic: ACTTGACTGTCAATCCCGATGAGGTTGTTGCATTAGGAGCTGCTGTTCAGgtaaaagttc ... ttaatttcagGCCGGTGTTCTGGCTGGAGAAGTCAGTGATCTAGTGTTACTGGACGTGACT
EST: ACTTGACTGTCAATCCCGATGAGGTTGTTGCATTAGGAGCTGCTGTTCAG GCCGGTGTTCTGGCTGGAGAAGTCAGTGATCTAGTGTTACTGGACGTGACTEST: gi|169021803|gb|FE429917.1|FE429917
genomic: ACTTGACTGTCAATCCCGATGAGGTTGTTGCATTAGGAGCTGCTGTTCAGgtaaaagttc ... ttaatttcagGCCGGTGTTCTGGCTGGAGAAGTCAGTGATCTAGTGTTACTGGACGTGACT
EST: ACTTGACTGTCAATCCCGATGAGGTTGTTGCATTAGGAGCTGCTGTTCAG GCCGGTGTTCTGGCTGGAGAAGTCAGCGATCTAGTGTTACTGGACGTGACTEST: gi|169100203|gb|FE502417.1|FE502417
genomic: ACTTGACTGTCAATCCCGATGAGGTTGTTGCATTAGGAGCTGCTGTTCAGgtaaaagttc ... ttaatttcagGCCGGTGTTCTGGCTGGAGAAGTCAGTGATCTAGTGTTACTGGACGTGACT
EST: ACTTGACTGTCAATCCCGATGAGGTTGTTGCATTAGGAGCTGCTGTTCAG GCCGGTGTTCTGGCTGGAGAAGTCAGCGATCTAGTGTTACTGGACGTGACTEST: gi|169082946|gb|FE491146.1|FE491146
genomic: ACTTGACTGTCAATCCCGATGAGGTTGTTGCATTAGGAGCTGCTGTTCAGgtaaaagttc ... ttaatttcagGCCGGTGTTCTGGCTGGAGAAGTCAGTGATCTAGTGTTACTGGACGTGACT
EST: ACTTGACTGTCAATCCCGATGAGGTTGTTGCATTAGGAGCTGCTGTTCAG GCCGGTGTTCTGGCTGGAGAAGTCAGCGATCTAGTGTTACTGGACGTGACT
genomic: ACTTGACTGTCAATCCCGATGAGGTTGTTGCATTAGGAGCTGCTGTTCAGgtaaaagttc ... ttaatttcagGCCGGTGTTCTGGCTGGAGAAGTCAGTGATCTAGTGTTACTGGACGTGACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATTCCAGCTGTTCAAGAGATCGTAAAGAGAATGACTGGCAGGGCCCCAAACTTGACTGTCAATCCCGATGAGGTTGTTGCATTAGGAGCTGCTGTTCAGgtaaaagttccggtaattggtcttggtactttactgagtattttaatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT