1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtcggttttgtagagtctgttgtaaagctgaagctaaagtttacttgctgcttgagcagAGGGTTGTCGATTATCTCGCAGCAAATTTCAAAAAGGAGGAAGGTATTGATCTATTGAAGGATAAGCAGGCGCTTCAAAGGCTGACGGAGACCGCTGAGA
species | Selaginella moellendorffii |
transcript | EFJ23703 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGTTATCAACATCTGGTGATACACACTTGGGTGGAGACGATTTTGACAAG AGGGTTGTCGATTATCTCGCAGCAAATTTCAAAAAGGAGGAAGGTATTGATEST: gi|169104027|gb|FE505040.1|FE505040
genomic: TGTTATCAACATCTGGTGATACACACTTGGGTGGAGACGATTTTGACAAGgtcggttttg ... gcttgagcagAGGGTTGTCGATTATCTCGCAGCAAATTTCAAAAAGGAGGAAGGTATTGAT
EST: TGTTATCAACATCTGGTGATACACACTTGGGTGGAGACGATTTTGACAAG AGGGTTGTCGATTATCTCGCAGCAAATTTCAAAAAGGAGGAAGGTATTGATEST: gi|169029193|gb|FE439399.1|FE439399
genomic: TGTTATCAACATCTGGTGATACACACTTGGGTGGAGACGATTTTGACAAGgtcggttttg ... gcttgagcagAGGGTTGTCGATTATCTCGCAGCAAATTTCAAAAAGGAGGAAGGTATTGAT
EST: TGTTATCAACATCTGGTGATACACACTTGGGTGGAGACGATTTTGACAAG AGGGTTGTCGATTATCTCGCAGCAAATTTCAAAAAGGAGGAAGGTATTGATEST: gi|169047500|gb|FE455695.1|FE455695
genomic: TGTTATCAACATCTGGTGATACACACTTGGGTGGAGACGATTTTGACAAGgtcggttttg ... gcttgagcagAGGGTTGTCGATTATCTCGCAGCAAATTTCAAAAAGGAGGAAGGTATTGAT
EST: TGTTATCAACATCTGGTGATACACACTTGGGTGGAGACGATTTTGACAAG AGGGTTGTCGATTATCTCGCAGCAAATTTCAAAAAGGAGGAAGGTATTGATEST: gi|169081877|gb|FE486424.1|FE486424
genomic: TGTTATCAACATCTGGTGATACACACTTGGGTGGAGACGATTTTGACAAGgtcggttttg ... gcttgagcagAGGGTTGTCGATTATCTCGCAGCAAATTTCAAAAAGGAGGAAGGTATTGAT
EST: TGTTATCAACATCTGGTGATACACACTTGGGTGGAGACGATTTTGACAAG AGGGTTGTCGATTATCTCGCAGCAAATTTCAAAAAGGAGGAAGGTATTGATEST: gi|169079168|gb|FE488653.1|FE488653
genomic: TGTTATCAACATCTGGTGATACACACTTGGGTGGAGACGATTTTGACAAGgtcggttttg ... gcttgagcagAGGGTTGTCGATTATCTCGCAGCAAATTTCAAAAAGGAGGAAGGTATTGAT
EST: TGTTATCAACATCTGGTGATACACACTTGGGTGGAGACGATTTTGACAAG AGGGTTGTCGATTATCTCGCAGCAAATTTCAAAAAGGAGGAAGGTATTGATEST: gi|169082126|gb|FE490586.1|FE490586
genomic: TGTTATCAACATCTGGTGATACACACTTGGGTGGAGACGATTTTGACAAGgtcggttttg ... gcttgagcagAGGGTTGTCGATTATCTCGCAGCAAATTTCAAAAAGGAGGAAGGTATTGAT
EST: TGTTATCAACATCTGGTGATACACACTTGGGTGGAGACGATTTTGACAAG AGGGTTGTCGATTATCTCGCAGCAAATTTCAAAAAGGAGGAAGGTATTGATEST: gi|169041609|gb|FE448218.1|FE448218
genomic: TGTTATCAACATCTGGTGATACACACTTGGGTGGAGACGATTTTGACAAGgtcggttttg ... gcttgagcagAGGGTTGTCGATTATCTCGCAGCAAATTTCAAAAAGGAGGAAGGTATTGAT
EST: TGTTATCAACATCTGGTGATACACACTTGGGTGGAGACGATTTTGACAAG AGGGTTGTCGATTATCTCGCAGCAAATTTCAAAAAGGAGGAAGGTATTGATEST: gi|169022591|gb|FE429670.1|FE429670
genomic: TGTTATCAACATCTGGTGATACACACTTGGGTGGAGACGATTTTGACAAGgtcggttttg ... gcttgagcagAGGGTTGTCGATTATCTCGCAGCAAATTTCAAAAAGGAGGAAGGTATTGAT
EST: TGTTATCAACATCTGGTGATACACACTTGGGTGGAGACGATTTTGACAAG AGGGTTGTCGATTATCTCGCAGCAAATTTCAAAAAGGAGGAAGGTATTGATEST: gi|169051045|gb|FE458215.1|FE458215
genomic: TGTTATCAACATCTGGTGATACACACTTGGGTGGAGACGATTTTGACAAGgtcggttttg ... gcttgagcagAGGGTTGTCGATTATCTCGCAGCAAATTTCAAAAAGGAGGAAGGTATTGAT
EST: TGTTATCAACATCTGGTGATACACACTTGGGTGGAGACGATTTTGACAAG AGGGTTGTCGATTATCTCGCAGCAAATTTCAAAAAGGAGGAAGGTATTGATEST: gi|169021803|gb|FE429917.1|FE429917
genomic: TGTTATCAACATCTGGTGATACACACTTGGGTGGAGACGATTTTGACAAGgtcggttttg ... gcttgagcagAGGGTTGTCGATTATCTCGCAGCAAATTTCAAAAAGGAGGAAGGTATTGAT
EST: TGTTATCAACATCTGGTGATACACACTTGGGTGGAGACGATTTTGACAAG AGGGTTGTCGATTATCTCGCAGCAAATTTCAAAAAGGAGGAAGGTATTGATEST: gi|169082946|gb|FE491146.1|FE491146
genomic: TGTTATCAACATCTGGTGATACACACTTGGGTGGAGACGATTTTGACAAGgtcggttttg ... gcttgagcagAGGGTTGTCGATTATCTCGCAGCAAATTTCAAAAAGGAGGAAGGTATTGAT
EST: TGTTATCAACATCTGGTGATACACACTTGGGTGGAGACGATTTTGACAAG AGGGTTGTCGATTATCTCGCAGCAAATTTCAAAAAGGAGGAAGGTATTGAT
genomic: TGTTATCAACATCTGGTGATACACACTTGGGTGGAGACGATTTTGACAAGgtcggttttg ... gcttgagcagAGGGTTGTCGATTATCTCGCAGCAAATTTCAAAAAGGAGGAAGGTATTGAT
gttttgtagagtctgttgtaaagctgaagctaaagtttacttgctgcttgagcagAGGGTTGTCGATTATCTCGCAGCAAATTTCAAAAAGGAGGAAGGTATTGATCTATTGAAGGATAAGCAGGCGCTTCAAAGGCTGACGGAGACCGCTGAGA
agctaaa putative branch site (score: 48)
taaagttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcggttttgtagagtctgttgtaaagctgaagctaaagtttacttgctgcttgagcagAGGGTTGTCGATTATCTCGCAGCAAATTTCAAAAAGGAGGAAGGTATTGATCTATTGAAGGATAAGCAGGCGCTTCAAAGGCTGACGGAGACCGCTGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG