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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATTGATCTATTGAAGGATAAGCAGGCGCTTCAAAGGCTGACGGAGACCGCTGAGAAGACAAAAATTGAGCTGTCATCACTTACACAAACAAGCATAAGgtaatgcgctctgttttctctagtcgtccttgtctcacagaatttgtcttggaccag

Basic information

species Selaginella moellendorffii
transcript EFJ23703
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169114873|gb|FE515822.1|FE515822
EST:     GCTGAGAAGACAAAAATTGAGCTGTCATCACTTACACAAACAAGCATAAG                         CTTGCCTTTCATCACGGCGACTGCGGATGGGCCGAAGCATATTGACGCAAC
genomic: GCTGAGAAGACAAAAATTGAGCTGTCATCACTTACACAAACAAGCATAAGgtaatgcgct ... cttggaccagCTTGCCTTTCATCACGGCGACTGCGGATGGGCCGAAGCATATTGACGCAAC
EST: gi|169104027|gb|FE505040.1|FE505040
EST:     GCTGAGAAGACAAAAATTGAGCTGTCATCACTTACACAAACAAGCATAAG                         CTTGCCTTTCATCACGGCGACTGCGGATGGGCCGAAGCATATTGACGCAAC
genomic: GCTGAGAAGACAAAAATTGAGCTGTCATCACTTACACAAACAAGCATAAGgtaatgcgct ... cttggaccagCTTGCCTTTCATCACGGCGACTGCGGATGGGCCGAAGCATATTGACGCAAC
EST: gi|169021042|gb|FE430651.1|FE430651
EST:     GCTGAGAAGACAAAAATTGAGCTGTCATCACTTACACAAACAAGCATAAG                         CTTGCCTTTCATCACGGCGACTGCGGATGGGCCGAAGCATATTGACGCAAC
genomic: GCTGAGAAGACAAAAATTGAGCTGTCATCACTTACACAAACAAGCATAAGgtaatgcgct ... cttggaccagCTTGCCTTTCATCACGGCGACTGCGGATGGGCCGAAGCATATTGACGCAAC
EST: gi|169029193|gb|FE439399.1|FE439399
EST:     GCTGAGAAGACAAAAATTGAGCTGTCATCACTTACACAAACAAGCATAAG                         CTTGCCTTTCATCACGGCGACTGCGGATGGGCCGAAGCATATTGACACAAC
genomic: GCTGAGAAGACAAAAATTGAGCTGTCATCACTTACACAAACAAGCATAAGgtaatgcgct ... cttggaccagCTTGCCTTTCATCACGGCGACTGCGGATGGGCCGAAGCATATTGACGCAAC
EST: gi|169047500|gb|FE455695.1|FE455695
EST:     GCTGAGAAGACAAAAATTGAGCTGTCATCACTTACACAAACAAGCATAAG                         CTTGCCTTTCATCACGGCGACTGCGGATGGGCCGAAGCATATTGACGCAAC
genomic: GCTGAGAAGACAAAAATTGAGCTGTCATCACTTACACAAACAAGCATAAGgtaatgcgct ... cttggaccagCTTGCCTTTCATCACGGCGACTGCGGATGGGCCGAAGCATATTGACGCAAC
EST: gi|169081877|gb|FE486424.1|FE486424
EST:     GCTGAGAAGACAAAAATTGAGCTGTCATCACTTACACAAACAAGCATAAG                         CTTGCCTTTCATCACGGCGACTGCGGATGGGCCGAAGCATATTGACACAAC
genomic: GCTGAGAAGACAAAAATTGAGCTGTCATCACTTACACAAACAAGCATAAGgtaatgcgct ... cttggaccagCTTGCCTTTCATCACGGCGACTGCGGATGGGCCGAAGCATATTGACGCAAC
EST: gi|169079168|gb|FE488653.1|FE488653
EST:     GCTGAGAAGACAAAAATTGAGCTGTCATCACTTACACAAACAAGCATAAG                         CTTGCCTTTCATCACGGCGACTGCGGATGGGCCGAAGCATATTGACACAAC
genomic: GCTGAGAAGACAAAAATTGAGCTGTCATCACTTACACAAACAAGCATAAGgtaatgcgct ... cttggaccagCTTGCCTTTCATCACGGCGACTGCGGATGGGCCGAAGCATATTGACGCAAC
EST: gi|169082126|gb|FE490586.1|FE490586
EST:     GCTGAGAAGACAAAAATTGAGCTGTCATCACTTACACAAACAAGCATAAG                         CTTGCCTTTCATCACGGCGACTGCGGATGGGCCGAAGCATATTGACACAAC
genomic: GCTGAGAAGACAAAAATTGAGCTGTCATCACTTACACAAACAAGCATAAGgtaatgcgct ... cttggaccagCTTGCCTTTCATCACGGCGACTGCGGATGGGCCGAAGCATATTGACGCAAC
EST: gi|169041609|gb|FE448218.1|FE448218
EST:     GCTGAGAAGACAAAAATTGAGCTGTCATCACTTACACAAACAAGCATAAG                         CTTGCCTTTCATCACGGCGACTGCGGATGGGCCGAAGCATATTGACGCAAC
genomic: GCTGAGAAGACAAAAATTGAGCTGTCATCACTTACACAAACAAGCATAAGgtaatgcgct ... cttggaccagCTTGCCTTTCATCACGGCGACTGCGGATGGGCCGAAGCATATTGACGCAAC
EST: gi|169022591|gb|FE429670.1|FE429670
EST:     GCTGAGAAGACAAAAATTGAGCTGTCATCACTTACACAAACAAGCATAAG                         CTTGCCTTTCATCACGGCGACTGCGGATGGGCCGAAGCATATTGACGCAAC
genomic: GCTGAGAAGACAAAAATTGAGCTGTCATCACTTACACAAACAAGCATAAGgtaatgcgct ... cttggaccagCTTGCCTTTCATCACGGCGACTGCGGATGGGCCGAAGCATATTGACGCAAC
EST: gi|169051045|gb|FE458215.1|FE458215
EST:     GCTGAGAAGACAAAAATTGAGCTGTCATCACTTACACAAACAAGCATAAG                         CTTGCCTTTCATCACGGCGACTGCGGATGGGCCGAAGCATATTGACGCAAC
genomic: GCTGAGAAGACAAAAATTGAGCTGTCATCACTTACACAAACAAGCATAAGgtaatgcgct ... cttggaccagCTTGCCTTTCATCACGGCGACTGCGGATGGGCCGAAGCATATTGACGCAAC
EST: gi|169021803|gb|FE429917.1|FE429917
EST:     GCTGAGAAGACAAAAATTGAGCTGTCATCACTTACACAAACAAGCATAAG                         CTTGCCTTTCATCACGGCGACTGCGGATGGGCCGAAGCATATTGACACAAC
genomic: GCTGAGAAGACAAAAATTGAGCTGTCATCACTTACACAAACAAGCATAAGgtaatgcgct ... cttggaccagCTTGCCTTTCATCACGGCGACTGCGGATGGGCCGAAGCATATTGACGCAAC
EST: gi|169100203|gb|FE502417.1|FE502417
EST:     GCTGAGAAGACAAAAATTGAGCTGTCATCACTTACACAAACAAGCATAAG                         CTTGCCTTTCATCACGGCGACTGCGGATGGGCCGAAGCATATTGACACAAC
genomic: GCTGAGAAGACAAAAATTGAGCTGTCATCACTTACACAAACAAGCATAAGgtaatgcgct ... cttggaccagCTTGCCTTTCATCACGGCGACTGCGGATGGGCCGAAGCATATTGACGCAAC
EST: gi|169082946|gb|FE491146.1|FE491146
EST:     GCTGAGAAGACAAAAATTGAGCTGTCATCACTTACACAAACAAGCATAAG                         CTTGCCTTTCATCACGGCGACTGCGGATGGGCCGAAGCATATTGACACAAC
genomic: GCTGAGAAGACAAAAATTGAGCTGTCATCACTTACACAAACAAGCATAAGgtaatgcgct ... cttggaccagCTTGCCTTTCATCACGGCGACTGCGGATGGGCCGAAGCATATTGACGCAAC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 30 (upstream exon), 35 (downstream exon)
Score: 37

GTATTGATCTATTGAAGGATAAGCAGGCGCTTCAAAGGCTGACGGAGACCGCTGAGAAGACAAAAATTGAGCTGTCATCACTTACACAAACAAGCATAAGgtaatgcgct ... cttggaccagCTTGCCTTTCATCACGGCGACTGCGGATGGGCCGAAGCATATTGACGCAACTATGACTCGGGCTAAGTTTGAGGAATTGTGTTCAGATTTGCTGGACAG




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