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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTACATTAAAGTGGAAGACAATCGCGTTGGGCCCTTGTTTAAGCATGTCTTTCCTCCTGCATTGGCTCCATCTCTCTCGTTTGTTGGCCTTCCTTGCAAGgttttcattgtttgtttcttcgagctcttccatctaagttgtcgtcctttccag

Basic information

species Selaginella moellendorffii
transcript EFJ23363
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ23363 (Selaginella moellendorffii), 5'ss of exon 5
lower sequence: GLYMA11G21380.1 (Glycine max), 5'ss of exon 7
CTACATTAA-AGTGGAAGACAATCGCGTTGGGCCCTTGTTTAAGCATGTCTTTCCTCCTGCATTGGCTCCATCTCTCTCGTTTGTTGGCCTTCCTTGCAAGgtt-ttcattgtttgtttcttcgagctcttccatctaa-gttgtcg-tcctttccag--------------------------------------------------------------------------
  | | ||| | | || || ||||| ||||| || || |  ||||||||||||||||||||||||||||| |  ||||| ||  ||||  | |||   |||||  ||  |   | ||||  ||    |||| | | ||| |   | | ||| ||   |                                                                          
-AATAGTAACAATTGAGGATAATCGTGTTGGCCCATTATACAAGCATGTCTTTCCTCCTGCATTGGCTCCTTGGCTCTCTTTCATTGGTATACCTGAAAAGgtaattggtaactagttttctc---ttctttcttgtaatgccattgctccattgtggaaactgaaaaccattcttgccacgttgaagaaagagaaatgatgcatatacacaatttttacgacattttacag