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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatttacgaattctccttctctttttcgtttcatataatgtgcttttgtagTTACTTATATAACTTTTCATTCTTGGACACCAAAAGCTACATTAAAGTGGAAGACAATCGCGTTGGGCCCTTGTTTAAGCATGTCTTTCCTCCTGCATTG

Basic information

species Selaginella moellendorffii
transcript EFJ23363
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169114483|gb|FE516553.1|FE516553
EST:     TTTATGGATGGAATGTCAGCTGTTGTGGATGTTATTTTGCATTGCACTGG                         TTACTTATATAACTTTTCATTCTTGGACACCAAAAGCTACA
genomic: TTTATGGATGGAATGTCAGCTGTTGTGGATGTTATTTTGCATTGCACTGGgtaatttacg ... gcttttgtagTTACTTATATAACTTTTCATTCTTGGACACCAAAAGCTACA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaatttacgaattctccttctctttttcgtttcatataatgtgcttttgtagTTACTTATATAACTTTTCATTCTTGGACACCAAAAGCTACATTAAAGTGGAAGACAATCGCGTTGGGCCCTTGTTTAAGCATGTCTTTCCTCCTGCATTG
                                             tgctttt  CT-rich tract
 tttcatataat  TA-rich tract