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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtcttctcaaagcatctaagaactttcatagatagaacgaagaactctttgtttctacagGGATTGAGAGGTGGCCTGGAAAGCATTACCACAGTCATACCTATCGCACTCCAGATCCTTTCAAAGACCAG

Basic information

species Selaginella moellendorffii
transcript EFJ23363
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169114483|gb|FE516553.1|FE516553
EST:     CGTGGTTTGTAATGGTCATTATTTCCAGCCAAGGGTCGCTCAAATTCCTG                         GGATTGAGAGGTGGCCTGGAAAGCATTACCACAGTCATACCTATCGCACTC
genomic: CGTGGTTTGTAATGGTCATTATTTCCAGCCAAGGGTCGCTCAAATTCCTGgtaagtcttc ... gtttctacagGGATTGAGAGGTGGCCTGGAAAGCATTACCACAGTCATACCTATCGCACTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcaaagcatctaagaactttcatagatagaacgaagaactctttgtttctacagGGATTGAGAGGTGGCCTGGAAAGCATTACCACAGTCATACCTATCGCACTCCAGATCCTTTCAAAGACCAG
                                       ctctttgtttctac  CT-rich tract
                  tttcata  TA-rich tract