1 5' 3' | 2 5' 3' | 3 5' 3' |
gcaagccgtttttccctttcaatctcttggggatggatggattgacttctttattgtttgacagGAACCACCGTGGTCTTCGTCACTACTGGGGTCTGCGCGTCCGCGGGCAGCACACCAAGACCACCGGACGCCGTGGAAGAACCGTGGGAGTCTCCAAGAAG
species | Selaginella moellendorffii |
transcript | EFJ22352 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCGCTGGACATGAAGCTCAGGGACGACCTCGAGAGGCTCAAGAAGATCAG GAACCACCGTGGTCTTCGTCACTACTGGGGCCTGCGCGTCCGCGGGCAGCAEST: gi|169023844|gb|FE436395.1|FE436395
genomic: GCGCTGGACATGAAGCTCAGGGACGACCTCGAGAGGCTCAAGAAGATCAGgcaagccgtt ... tgtttgacagGAACCACCGTGGTCTTCGTCACTACTGGGGTCTGCGCGTCCGCGGGCAGCA
EST: GCGCTCGACATGAAGCTCAGGGACGACCTCGAGAGGCTCAAGAAGATCAG GAACCACCGTGGTCTTCGTCACTACTGGGGTCTGCGCGTCCGCGGGCAGCAEST: gi|169075906|gb|FE480966.1|FE480966
genomic: GCGCTGGACATGAAGCTCAGGGACGACCTCGAGAGGCTCAAGAAGATCAGgcaagccgtt ... tgtttgacagGAACCACCGTGGTCTTCGTCACTACTGGGGTCTGCGCGTCCGCGGGCAGCA
EST: GCGCTGGACATGAAGCTCAGGGACGACCTCGAGAGGCTCAAGAAGATCAG GAACCACCGTGGTCTTCGTCACTACTGGGGCCTGCGCGTCCGCGGGCAGCAEST: gi|70669635|gb|DN838212.1|DN838212
genomic: GCGCTGGACATGAAGCTCAGGGACGACCTCGAGAGGCTCAAGAAGATCAGgcaagccgtt ... tgtttgacagGAACCACCGTGGTCTTCGTCACTACTGGGGTCTGCGCGTCCGCGGGCAGCA
EST: GCGCTGGACATGAAGCTCAGGGACGACCTCGAGAGGCTCAAGAAGATCAG GAACCACCGTGGTCTTCGTCACTACTGGGGCCTGCGCGTCCGCGGGCAGCAEST: gi|169096504|gb|FE499208.1|FE499208
genomic: GCGCTGGACATGAAGCTCAGGGACGACCTCGAGAGGCTCAAGAAGATCAGgcaagccgtt ... tgtttgacagGAACCACCGTGGTCTTCGTCACTACTGGGGTCTGCGCGTCCGCGGGCAGCA
EST: GCGCTGGACATGAAGCTCAGGGACGACCTCGAGAGGCTCAAGAAGATCAG GAACCACCGTGGTCTTCGTCACTACTGGGGCCTGCGCGTCCGCGGGCAGCAEST: gi|169024190|gb|FE433036.1|FE433036
genomic: GCGCTGGACATGAAGCTCAGGGACGACCTCGAGAGGCTCAAGAAGATCAGgcaagccgtt ... tgtttgacagGAACCACCGTGGTCTTCGTCACTACTGGGGTCTGCGCGTCCGCGGGCAGCA
EST: GCGCTCGACATGAAGCTCAGGGACGACCTCGAGAGGCTCAAGAAGATCAG GAACCACCGTGGTCTTCGTCACTACTGGGGTCTGCGCGTCCGCGGGCAGCAEST: gi|169114528|gb|FE516598.1|FE516598
genomic: GCGCTGGACATGAAGCTCAGGGACGACCTCGAGAGGCTCAAGAAGATCAGgcaagccgtt ... tgtttgacagGAACCACCGTGGTCTTCGTCACTACTGGGGTCTGCGCGTCCGCGGGCAGCA
EST: GCGCTGGACATGAAGCTCAGGGACGACCTCGAGAGGCTCAAGAAGATCAG GAACCACCGTGGTCTTCGTCACTACTGGGGCCTGCGCGTCCGCGGGCAGCA
genomic: GCGCTGGACATGAAGCTCAGGGACGACCTCGAGAGGCTCAAGAAGATCAGgcaagccgtt ... tgtttgacagGAACCACCGTGGTCTTCGTCACTACTGGGGTCTGCGCGTCCGCGGGCAGCA
ttttccctttcaatctcttggggatggatggattgacttctttattgtttgacagGAACCACCGTGGTCTTCGTCACTACTGGGGTCTGCGCGTCCGCGGGCAGCACACCAAGACCACCGGACGCCGTGGAAGAACCGTGGGAGTCTCCAAGAAG
gattgac putative branch site (score: 89)
cttctttattgttt CT-rich tract
tttattgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaagccgtttttccctttcaatctcttggggatggatggattgacttctttattgtttgacagGAACCACCGTGGTCTTCGTCACTACTGGGGTCTGCGCGTCCGCGGGCAGCACACCAAGACCACCGGACGCCGTGGAAGAACCGTGGGAGTCTCCAAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG