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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtttgccctttcttttcctcttgctctgctggtgagctgaaagatcttgttttctcgtcattttcttctatggatgactatcttccttgatctttcggattgattgattgagcttcttcattgatttgaaaaaaaaaatctgtgcttatcatttttctttgtttctttctcttccatcgaacagGGCTGGTGAGCTCACTGCTGCGGAGCTCGAGAACCTCATGGTGATCGTTGCCAACCCCCGCCAGTTCAAGATCCCCGACTGGTTCCTCAACAGGAAGAAG

Basic information

species Selaginella moellendorffii
transcript EFJ22352
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ22352 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: LOC_Os03g58050.1 (Oryza sativa), 3'ss of exon 2
gtatgtttgccctttcttttcctcttgctctgctggtgagctgaaagatcttgttttctcgtcattttcttctatggatgactatcttccttgatctttcggattgattgattgagcttcttcattgatttgaaaaaaaaaatctgtgcttatcatttttctttgtttctttctcttccatcgaacagGGCTGGTGAGCTCACTGCTGCGGAGCTCGAGAACCTCATGGTGATCGTTGCCAACCCCCGCCAGTTCAAGATCCCCGACTGGTTCCTCAACAGGAAGAAG
                                                                           | | ||   || ||||    |||   |      |  |      ||   | || |  |              ||   | | |  | || |||   |     ||     |  |||||| |||||||| ||  | | |||||| |||   || |||    | || || ||||| || ||||||||| | |||||||||||||||||||||||||||
---------------------------------------------------------------------------gcaagaacctcctcctcctccttctcg------tcgtcagatctcggtaatggtgggtgggtgggtcgggctgacgaccgtcgtgctgtgtccgtgg---ttggggagtgcagGGCCGGTGAGCTTACGCCGGAGGAGCTGGAGCGGCTGATGACCGTGGTGGCGAACCCGCGGCAGTTCAAGGTGCCCGACTGGTTCCTCAACAGGAAGAAG

upper sequence: EFJ22352 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: LOC_Os07g07709.1 (Oryza sativa), 3'ss of exon 2
gtatgtttgccctttcttttcctcttgctctgctggtgagctgaaagatcttgttttctcgtcattttcttctatggatgactatcttccttgatctttcggattgattgattgagcttcttcattgatttgaaaaaaaaaatctgtgcttatcatttttctttgtttctttctcttccatcgaacagGGCTGGTGAGCTCACTGCTGCGGAGCTCGAGAACCTCATGGTGATCGTTGCCAACCCCCGCCAGTTCAAGATCCCCGACTGGTTCCTCAACAGGAAGAAG
                                                                             |||||| | |  |   | |      ||    || |   | || |      |    ||  |         | ||  | |     ||     |  || |  ||  |     ||||||||||| |||||| ||| |||||| |||  |||||||    | || || ||||| |||||||||||| |||| |||||||| || ||||||||||||
-----------------------------------------------------------------------------atgactttgtaaccaaaac------ataagatggtgatgattttgtgcaaaaccaaaggacttttatgttactagtgagaaagctaacaattatttttctctgt-----agGGCTGGTGAACTCACTCCTGAGGAGCTTGAGCGCCTCATGACTGTGGTGGCAAACCCTCGCCAGTTCAAGGTCCCTGACTGGTTTCTGAACAGGAAGAAG

upper sequence: EFJ22352 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: LOC_Os07g07719.1 (Oryza sativa), 3'ss of exon 1
gtatgtttgccctttcttttcctcttgctctgctggtgagctgaaagatcttgttttctcgtcattttcttctatggatgactatcttccttgatctttcggattgattgattgagcttcttcattgatttgaaaaaaaaaatctgtgcttatcatttttctttgtttctttctcttccatcgaacagGGCTGGTGAGCTCACTGCTGCGGAGCTCGAGAACCTCATGGTGATCGTTGCCAACCCCCGCCAGTTCAAGATCCCCGACTGGTTCCTCAACAGGAAGAAG
                                                                             |||||| | |  |   | |      ||    || |   | || |      |    ||  |       | | ||  | |     ||     |  |  |  ||  |     ||||||||||| |||||| ||| |||||| |||  |||||||    | || || ||||| |||||||||||| |||| |||||||| || ||||||||||||
-----------------------------------------------------------------------------atgactttgtaaccaaaac------ataagatggtgatgattttgtgcaaaaccaaaggacttttattttactagtgagaaagctaacaattatgtttctctgt-----agGGCTGGTGAACTCACTCCTGAGGAGCTTGAGCGCCTCATGACTGTGGTGGCAAACCCTCGCCAGTTCAAGGTCCCTGACTGGTTTCTGAACAGGAAGAAG

upper sequence: EFJ22352 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: GRMZM2G130544_T01 (Zea mays), 3'ss of exon 1
gtatgtttgccctttcttttcctcttgctctgctggtgagctgaaagatcttgttttctcgtcattttcttctatggatgactatcttccttgatctttcggattgattgattgagcttcttcattgatttgaaaaaaaaaatctgtgcttatcatttttctttgtttctttctcttccatcgaacagGGCTGGTGAGCTCACTGCTGCGGAGCTCGAGAACCTCATGGTGATCGTTGCCAACCCCCGCCAGTTCAAGATCCCCGACTGGTTCCTCAACAGGAAGAAG
                                                                                |   ||   ||| | ||    |  |  |  ||      |||    |||   ||           ||||  |   || ||    ||||||  |       |  |  |||||| || ||||| ||  |||  ||||| |||  ||| |||  | |||| ||||||||  | ||||||||| | || ||||||||||||||||||||||||
-----------------------------------------------------------------------------gcaagcgtcgcgctttagctccaaggatatt--atcagatctctctggtgac--ga-----------tgtggctgatatgttgtgatgtttcggtg------agtgtgcagGGCCGGCGAGCTGACGCCTGATGAGCTGGAGCGCCTGATGACGGTCGTGGCCAACCCTAGGCAGTTCAAGGTGCCGGACTGGTTCCTCAACAGGAAGAAG

upper sequence: EFJ22352 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: GRMZM2G178341_T01 (Zea mays), 3'ss of exon 2
gtatgtttgccctttcttttcctcttgctctgctggtgagctgaaagatcttgttttctcgtcattttcttctatggatgactatcttccttgatctttcggattgattgattgagcttcttcattgatttgaaaaaaaaaatctgtgcttatcatttttctttgtttc-tttctcttccatcgaacagGGCTGGTGAGCTCACTGCTGCGGAGCTCGAGAACCTCATGGTGATCGTTGCCAACCCCCGCCAGTTCAAGATCCCCGACTGGTTCCTCAACAGGAAGAAG
                                                                                                             |   | |||   |  | | | |||  |    |    ||   | |  |     | ||  |    |  |  | |  |  |||||| |||||||| ||  |||  ||||| |||  ||| |||  | |||| || |||||  | ||||||||| | || ||||||||||||||||||||||||
-------------------------------------------------------------------------------------------------------------gcaagcgctgtgttttcgctctgaggaccttatcaggtctctctggtgacgatgtgcctgacatgccggcgagtgtgcagGGCCGGTGAGCTGACGCCTGAAGAGCTGGAGCGCCTGATGACGGTCGTGGCGAACCCTAGGCAGTTCAAGGTGCCGGACTGGTTCCTCAACAGGAAGAAG

upper sequence: EFJ22352 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: GRMZM2G062911_T01 (Zea mays), 3'ss of exon 2
gtatgtttgccctttcttttcctcttgctctgctggtgagctgaaagatcttgttttctcgtcattttcttctatggatgactatcttccttgatctttcggattgattgattgagcttcttcattgatttgaaaaaaaaaatctgtgcttatcatttttctttgtttctttctcttccatcgaacagGGCTGGTGAGCTCACTGCTGCGGAGCTCGAGAACCTCATGGTGATCGTTGCCAACCCCCGCCAGTTCAAGATCCCCGACTGGTTCCTCAACAGGAAGAAG-
                                                                                        |  |    | || | || |||   |  | |  ||||   |||         |       | | | || |  |   || |  ||| | |||  |||  ||||||||||||||| |     |  ||||| |||  |||||||    | ||||||||||| |||||||| ||| |||  |||||||||||||||| |||| |  
------------------------------------------------------------------------------------gtgccaataggatgtcagtttaattttgtatgttatttcaggaattccctgttgcatg---aagttcagcactgatgaatgatg-tttatattctttcgtgcagGGCTGGTGAGCT-ATCCTAGATGAGCTTGAGCGCCTCATGACTGTGGTTGCCAACCCTCGCCAGTTTAAGGTCCTTGACTGGTTCCTCAACAAGAAGGACT

upper sequence: EFJ22352 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: AT4G09800.1 (Arabidopsis thaliana), 3'ss of exon 2
gtatgtttgccctttcttttcctcttgctctgctggtgagctgaaagatcttgttttctcgtcattttcttctatggatgactatcttccttgatctttcggattgattgat-tgagcttcttcattgatttgaaaaaaaaaat-ctgtgcttatcatttttctttgtttctttctcttccatcgaacagGGCTGGTGAGCTCACTGCTGCGGAGCTCGAGAACCTCATGGTGATCGTTGCCAACCCCCGCCAGTTCAAGATCCCCGACTGGTTCCTCAACAGGAAGAAG
                                                                                      |  || |||| |   ||| |    || | |   | |    |  |||| |||      | || ||      ||| || | |   | | |    |   |  ||||||||||||||| |  ||||||| ||| | || |||||||||   |||||||| ||||| || |||||||||||||| ||||||||| | |||||| |||||
-------------------------------------------------------------------------------------atctctagatcat--agatcggcgcatattattgtgtctcgtagtttgcaaattgtgttgctttgtgggagattgttgtct---tatatgatgtatgtttaacagGGCTGGTGAGTTATCTGCTGCTGAGATTGATAACCTCATGACAATCGTTGCAAACCCACGTCAGTTCAAGATCCCAGACTGGTTCTTGAACAGGCAGAAG

upper sequence: EFJ22352 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: AT1G22780.1 (Arabidopsis thaliana), 3'ss of exon 2
gtatgtttgccctttcttttcctcttgctctgctggtgagctgaaagatcttgttttctcgtcattttcttctatggatgactatcttccttgatctttcggattgattgattgagcttcttca--ttgatttgaaaaaaaaaatctgtgcttat---catttttctttgtttctttctcttccatcgaa--cagGGCTGGTGAGCTCACTGCTGCGGAGCTCGAGAACCTCATGGTGATCGTTGCCAACCCCCGCCAGTTCAAGATCCCCGACTGGTTCCTCAACAGGAAGAAG
                                                                                                ||||   ||     || || |||||  |  ||||| |     || || | ||  ||  |     |||||   ||||| || || | |      |  ||||||||| || || | |||||| ||| | || |||||||||   |||||||| ||||| ||||||||||||||||| |||||||| || |||||  | |||
--------------------------------------------------------------------------------------------aggttttc---tttgcacatagaacttctctagattgatattcttgaagaagtttggtctagtgtgtgtttttaaatgttttttcctttgctggtatattcagGGCTGGAGAACTAAGTGCTGCTGAGATTGATAACCTCATGACAATCGTTGCTAACCCTCGCCAGTTCAAGATCCCAGACTGGTTTCTTAACAGACAAAAG

upper sequence: EFJ22352 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: Vv05s0020g03450.t01 (Vitis vinifera), 3'ss of exon 2
gtatgtttgccctttcttttcctcttgctctgctggtgagctgaaagatcttgttttctcgtcattttcttctatggatgactatcttccttgatctttcggattgattgattgagcttcttcattgatttgaaaaaaaaaatctgtgcttatcatttttctttgtttctttctcttccatcgaacagGGCTGGTGAGCTCACTGCTGCGGAGCTCGAGAACCTCATGGTGATCGTTGCCAACCCCCGCCAGTTCAAGATCCCCGACTGGTTCCTCAACAGGAAGAAG
                                                                        | |||  |   ||     ||| ||| |    |  |||       ||| ||| |||  ||  |    ||  | ||   |||  |   || | |   |  ||  |||         || |||||||| ||  ||||||| |||||||||||||| |||||||| || || || || || ||||| |||||||| |||||||| || ||||||||||| 
-----------------------------------------------------------------------gtttggtagtagatggattttggtctctactttctatt-------cttattctttg--ttatatttgaatttttggcattactaaaattttctaaatggtttacttt--------agAGCTGGTGAACTATCTGCTGCTGAGCTCGAGAACCTGATGGTGATTGTGGCGAATCCTCGTCAGTTTAAGATCCCTGACTGGTTTCTGAACAGGAAGAAA

upper sequence: EFJ22352 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: EDP08449 (Chlamydomonas reinhardtii), 3'ss of exon 1
gtatgtttgccctttcttttcctcttgctctgctggtgagctgaaagatcttgttttctcgtcattttcttctatggatgactatcttccttgatctttcggattgattgattgagcttc---ttcattgatttgaaaaaaaaaatctgtgcttatcatttttctttgtttctttctcttccatcgaacagG----GCTGGTGAGCTCACTGCTGCGGAGCTCGAGAACCTCATGGTGATCGTTGCCAACCCCCGCCAGTTCAAGATCCCCGACTGGTTCCTCAACAGGAAGAAG-----
                                                                                                     | |  | ||  |  || |    | ||| |  ||  |         |||| |  | || ||  |     | |  || |        |  | |     | || |||  | | || |  ||||| |||  | | ||||  ||||| || |||||||||  || ||||||||||||||||||||| |||||| |||||     
---------------------------------------------------------------------------------------------------aaggtccactggctctgcatgcagtgcatggcgtttcagggctgcggctgt-cccaccacttaacgggcatccgctcacacgggcaaactacgtgtcacagGCGAGTGCTCGGCCGATGAGCTGGAGCGCATGATGGGCATCGTCGCGAACCCCCGCGCGTACAAGATCCCCGACTGGTTCCTGAACAGGCAGAAGGACCA

upper sequence: EFJ22352 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: PP1S72_222V6.2 (Physcomitrella patens), 3'ss of exon 2
gtatgtttgccctttcttttcctcttgctctgctggtgagctgaaagatcttgttttctcgtcattttcttctatggatgactatcttccttgatctttcggattgattgattgagcttct--tcattgatttgaa--aaaaaaaatctgtgcttatcatttttcttt-gtttctttctcttccatcgaacagGGCTGGTGAGCTCACTGCTGCGGAGCTCGAGAACCTCATGGTGATCGTTGCCAACCCCCGCCAGTTCAAGATCCCCGACTGGTTCCTCAACAGGAAGAAG
                                                                                           |||  ||  | |||   ||| ||||    |  | |  | ||| |    | | ||| |  ||   |||| | || ||  |  |||     ||  ||   | |||||||| |||||| | || || |||||||||||||| ||||| |||||||| ||||| || || ||||||||||| ||||||||| | ||||||||||| 
------------------------------------------------------------------------------------------ctgagattaggaattctgtgagtgagtccatgatgaacgttttcagttgagagaaaccgatgacaatcactcttattcagcatctcggaattgaat---atagGGCTGGCGAGCTCTCCGCAGCTGAGCTCGAGAACCTGATGGTCATCGTTGCTAACCCTCGTCAATTCAAGATCCCAGACTGGTTCTTGAACAGGAAGAAA

upper sequence: EFJ22352 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: PP1S14_433V6.1 (Physcomitrella patens), 3'ss of exon 2
gtatgtttgccctttcttttcctcttgctctgctggtgagctgaaagatcttgttttctcgtcattttcttctatggatgactatcttccttgatctttcggattgattgattgagcttcttcattgatt-tgaaaaaaaaaatctgtgcttatcatttttctttgtttctttctcttccatcgaacagGGCTGGTGAGCTCACTGCTGCGGAGCTCGAGAACCTCATGGTGATCGTTGCCAACCCCCGCCAGTTCAAGATCCCCGACTGGTTCCTCAACAGGAAGAAG
                                                                                       | || ||  ||| || ||  | |  |   |||||   |   |  | |         ||        ||  |||||||  ||   |   |   |  |   ||| || ||||||||  | || || ||||| |||||| | ||||||||||||||||| || ||||||||||||||||| || ||||| || ||||| ||||||
---------------------------------------------------------------------------------------tgctagag-tttagggtttctggcgtctacttctctctaagtggtaatcgcccgggtccaaagaattcgcttttcttacttgagtatgcaatc-ccattcagAGCCGGTGAGCTGTCCGCGGCTGAGCTTGAGAACTTGATGGTGATCGTTGCCAATCCTCGCCAGTTCAAGATCCCAGATTGGTTTCTGAACAGAAAGAAG

upper sequence: EFJ22352 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: PP1S14_438V6.1 (Physcomitrella patens), 3'ss of exon 2
gtatgtttgccctttcttttcctcttgctctgctggtgagctgaaagatcttgttttctcgtcattttcttctatggatgactatcttccttgatctttcggattgattgattgagcttcttcattgatttgaaaaaaaaaatctgtgcttatcatttttctttgtttctttctcttccatcgaacagGGCTGGTGAGCTCACTGCTGCGGAGCTCGAGAACCTCATGGTGATCGTTGCCAACCCCCGCCAGTTCAAGATCCCCGACTGGTTCCTCAACAGGAAGAAG
                                                                        || |||  | | |  |||||   ||     |   |   ||     | |  |   ||    |     |||  |  |||| || |  |||  | |  ||    ||           ||||||||||||||| | ||||| || ||||||||  | ||||| || ||||||||||| |||||||||||| |||| || |||||| | || |||||||| 
------------------------------------------------------------------------taaggaataatgtagtcctt---ctgcgacaaaaagccatccgtgtgcaccgacgacacaattcgcaaa--ccttgctcattaagtttggtggaatcgaattc-----------agGGCTGGTGAGCTCTCCGCTGCTGAACTCGAGAATTTGATGGTTATTGTTGCCAACCCTCGCCAGTTCAAGGTCCCAGATTGGTTCTTGAATAGGAAGAAA

upper sequence: EFJ22352 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: PP1S242_94V6.1 (Physcomitrella patens), 3'ss of exon 2
gtatgtttgccctttcttttcctcttgctctgctggtgagctgaaagatcttgttttctcgtcattttcttctatggatgactatcttccttgatctttcggattgattgattgagcttcttcattgatttgaaaaaaaaaatctgtgcttatcatttttctttgtttctttctcttccatcgaacagGGCTGGTGAGCTCACTGCTGCGGAGCTCGAGAACCTCATGGTGATCGTTGCCAACCCCCGCCAGTTCAAGATCCCCGACTGGTTCCTCAACAGGAAGAAG
                                                                                       |  ||   | | | | |   ||  ||    | |||  |||| |           || | | |||||  || ||||||     ||| |      ||   |||||| || ||  |  |||| || ||||| |||||| | ||||| ||||||||||| || ||||||||||||||||| || ||||| || ||||| ||||| 
--------------------------------------------------------------------------------------gtagttaggcatgctggtgtcttagttcctttactttgttgagtgacgcgtcgcgattt-tacttatagttcttcttttggctttttttggttgtccc-cagGGCCGGCGAATTGTCTGCAGCCGAGCTTGAGAACTTAATGGTCATCGTTGCCAATCCTCGCCAGTTCAAGATCCCGGATTGGTTTCTGAACAGAAAGAAA

upper sequence: EFJ22352 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: PP1S215_81V6.1 (Physcomitrella patens), 3'ss of exon 2
gtatgtttgccctttcttttcctcttgctctgctggtgagctgaaagatcttgttttctcgtcattttcttctatggatgactatcttccttgatctttcggattgattgattgagcttcttcattgatttgaaaaaaaaaatctg--tgcttatcatttttctttgtttctttctcttccatcgaacagGGCTGGTGAGCTCACTGCTGCGGAGCTCGAGAACCTCATGGTGATCGTTGCCAACCCCCGCCAGTTCAAGATCCCCGACTGGTTCCTCAACAGGAAGAAG
                                                                                          |   |||  | ||        | |       | ||| |||  ||||      |  |  |  |||  ||| ||||   |||  |  ||||  ||    ||| || ||||||||| | || || ||||| |||||| | |||||||| ||||| ||||| |||||||||||||| || || ||||| || ||||| ||||| 
------------------------------------------------------------------------------------------tacttctccctgaacagcgactcggatcctcttatttattgtaaaattgtggttcgattttttagtattgttctaattttagtcttcttttattcttcagAGCCGGTGAGCTCTCCGCAGCAGAGCTGGAGAACTTGATGGTGATTGTTGCTAACCCTCGCCAGTTCAAGATTCCAGATTGGTTTCTTAACAGAAAGAAA

upper sequence: EFJ22352 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: PP1S215_71V6.1 (Physcomitrella patens), 3'ss of exon 2
gtatgtttgccctttcttttcctcttgctctgctggtgagctgaaagatcttgttttctcgtcattttcttctatggatgactatcttccttgatctttcggattgattga-ttgagcttcttcattgatttgaaaaaaaaaatctgtgcttatcatttttctttgtttctttctcttccatcgaacagGGCTGGTGAGCTCACTGCTGCGGAGCTCGAGAACCTCATGGTGATCGTTGCCAACCCCCGCCAGTTCAAGATCCCCGACTGGTTCCTCAACAGGAAGAAG
                                                                                  |||  |   ||   ||| || ||   ||  ||  |  |||  |    || |  | ||    || |    | |||| |     ||||||| |   |  | |    |||||| || |||||  | || || ||||| |||||| | |||||||| ||||| ||||| |||||||||||||| || || |||||| | |||||||| || 
--------------------------------------------------------------------------------cttattgtttatgggatttagggtttcgtgtcttttgtgtctctacgagttcgtgagaac---tccgaatgtctcatctcg---tgtttctctaaatcacgt---gcagGGCCGGCGAGCTTTCCGCAGCAGAGCTGGAGAACTTAATGGTGATAGTTGCTAACCCTCGCCAGTTCAAGATTCCAGATTGGTTCTTGAACAGGAAAAAA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169094756|gb|FE492933.1|FE492933
EST:     CGATTCGCCAACATCGTCTGCAAGAAGGCGGATGTGGACATGAACAAGAG                         GGCTGGTGAGCTGACTGCTGCGGAGCTCGAGAACCTCATGGTGATCGTTGC
genomic: CGATTCGCCAACATCGTCTGCAAGAAGGCGGATGTGGACATGAACAAGAGgtatgtttgc ... catcgaacagGGCTGGTGAGCTCACTGCTGCGGAGCTCGAGAACCTCATGGTGATCGTTGC
EST: gi|169023844|gb|FE436395.1|FE436395
EST:     CGATTCGCCAACATCGTCTGCAAGAAGGCGGATGTGGACATGAACAAGAG                         GGCTGGTGAGCTCACTGCTGCGGAGCTCGAGAACCTCATGGTGATCGTTGC
genomic: CGATTCGCCAACATCGTCTGCAAGAAGGCGGATGTGGACATGAACAAGAGgtatgtttgc ... catcgaacagGGCTGGTGAGCTCACTGCTGCGGAGCTCGAGAACCTCATGGTGATCGTTGC
EST: gi|169075906|gb|FE480966.1|FE480966
EST:     CGATTCGCCAACATCGTCTGCAAGAAGGCGGATGTGGACATGAACAAGAG                         GGCTGGTGAGCTGACTGCTGCGGAGCTCGAGAACCTCATGGTGATCGTTGC
genomic: CGATTCGCCAACATCGTCTGCAAGAAGGCGGATGTGGACATGAACAAGAGgtatgtttgc ... catcgaacagGGCTGGTGAGCTCACTGCTGCGGAGCTCGAGAACCTCATGGTGATCGTTGC
EST: gi|70669635|gb|DN838212.1|DN838212
EST:     CGATTCGCCAACATCGTCTGCAAGAAGGCGGATGTGGACATGAACAAGAG                         GGCTGGTGAGCTGACTGCTGCGGAGCTCGAGAACCTCATGGTGATCGTTGC
genomic: CGATTCGCCAACATCGTCTGCAAGAAGGCGGATGTGGACATGAACAAGAGgtatgtttgc ... catcgaacagGGCTGGTGAGCTCACTGCTGCGGAGCTCGAGAACCTCATGGTGATCGTTGC
EST: gi|169096504|gb|FE499208.1|FE499208
EST:     CCAACATCGTCTGCAAGAAGGCGGATGTGGACATGAACAAGAG                         GGCTGGTGAGCTGACTGCTGCGGAGCTCGAGAACCTCATGGTGATCGTTGC
genomic: CCAACATCGTCTGCAAGAAGGCGGATGTGGACATGAACAAGAGgtatgtttgc ... catcgaacagGGCTGGTGAGCTCACTGCTGCGGAGCTCGAGAACCTCATGGTGATCGTTGC
EST: gi|169024190|gb|FE433036.1|FE433036
EST:     CGATTCGCCAACATCGTCTGCAAGAAGGCGGATGTGGACATGAACAAGAG                         GGCTGGTGAGCTCACTGCTGCGGAGCTCGAGAACCTCATGGTGATCGTTGC
genomic: CGATTCGCCAACATCGTCTGCAAGAAGGCGGATGTGGACATGAACAAGAGgtatgtttgc ... catcgaacagGGCTGGTGAGCTCACTGCTGCGGAGCTCGAGAACCTCATGGTGATCGTTGC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 31 (upstream exon), 35 (downstream exon)
Score: 87

GGCGGCAGAAGATTATGTTCGCGCTGACTTCCATCAAGGGAATTGGGCGCCGATTCGCCAACATCGTCTGCAAGAAGGCGGATGTGGACATGAACAAGAGgtatgtttgc ... catcgaacagGGCTGGTGAGCTCACTGCTGCGGAGCTCGAGAACCTCATGGTGATCGTTGCCAACCCCCGCCAGTTCAAGATCCCCGACTGGTTCCTCAACAGGAAGAAG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaaaaaaatctgtgcttatcatttttctttgtttctttctcttccatcgaacagGGCTGGTGAGCTCACTGCTGCGGAGCTCGAGAACCTCATGGTGATCGTTGCCAACCCCCGCCAGTTCAAGATCCCCGACTGGTTCCTCAACAGGAAGAAG
         tctgtgcttatcattt  CT-rich tract
                ttatcatttttcttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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