1 5' 3' | 2 5' 3' | 3 5' 3' |
GGGTTTTTGGAATTAGGGTTCTTCAGCCGCCAGTAAGAGCAAGGGATCTCGGGTCGGGAGCTGAGGCGCTCGGCGGCAAGATGgtatgattcttgtgttgggtgttgaaataatcctccggcgcctctgttttggcag
species | Selaginella moellendorffii |
transcript | EFJ22352 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TAAGAGCAAGGGATCTCGGGTCGGGAGCTGAGGCGCTCGGCGGCAAGATG TCTCTGGTGAGCAATGAGGAGTTCCAGCACATTCTTCGTGTGCTCAACACGEST: gi|169023844|gb|FE436395.1|FE436395
genomic: TAAGAGCAAGGGATCTCGGGTCGGGAGCTGAGGCGCTCGGCGGCAAGATGgtatgattct ... gttttggcagTCTCTGGTGAGCAATGAGGAGTTCCAGCACATTCTTCGTGTGCTCAACACG
EST: AAAGAGCAAGGGATCTCGGGTCGGGAGCTGAGGCGCTCGGCGGCAAGATG TCTCTGGTGAGCAATGAGGAGTTCCAGCACATTCTTCGTGTGCTCAACACGEST: gi|169075906|gb|FE480966.1|FE480966
genomic: -AAGAGCAAGGGATCTCGGGTCGGGAGCTGAGGCGCTCGGCGGCAAGATGgtatgattct ... gttttggcagTCTCTGGTGAGCAATGAGGAGTTCCAGCACATTCTTCGTGTGCTCAACACG
EST: GAGCAAGGGATCTCGGGTCGGGAGCTGAGGCGCTCGGCGGCAAGATG TCTCTGGTGAGCAATGAGGAGTTCCAGCACATTCTTCGTGTGCTCAACACGEST: gi|70669635|gb|DN838212.1|DN838212
genomic: GAGCAAGGGATCTCGGGTCGGGAGCTGAGGCGCTCGGCGGCAAGATGgtatgattct ... gttttggcagTCTCTGGTGAGCAATGAGGAGTTCCAGCACATTCTTCGTGTGCTCAACACG
EST: TAAGAGCAAGGGATCTCGGGTCGGGAGCTGAGGCGCTCGGCGGCAAGATG TCTCTGGTGAGCAATGAGGAGTTCCAGCACATTCTTCGTGTGCTCAACACGEST: gi|169024190|gb|FE433036.1|FE433036
genomic: TAAGAGCAAGGGATCTCGGGTCGGGAGCTGAGGCGCTCGGCGGCAAGATGgtatgattct ... gttttggcagTCTCTGGTGAGCAATGAGGAGTTCCAGCACATTCTTCGTGTGCTCAACACG
EST: AAAGAGCAAGGGATCTCGGGTCGGGAGCTGAGGCGCTCGGCGGCAAGATG TCTCTGGTGAGCAATGAGGAGTTCCAGCACATTCTTCGTGTGCTCAACACG
genomic: -AAGAGCAAGGGATCTCGGGTCGGGAGCTGAGGCGCTCGGCGGCAAGATGgtatgattct ... gttttggcagTCTCTGGTGAGCAATGAGGAGTTCCAGCACATTCTTCGTGTGCTCAACACG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGTTTTTGGAATTAGGGTTCTTCAGCCGCCAGTAAGAGCAAGGGATCTCGGGTCGGGAGCTGAGGCGCTCGGCGGCAAGATGgtatgattcttgtgttgggtgttgaaataatcctccggcgcctctgttttggcag
- - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG