1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaagaaaaccaacttctttgattaaaacattccattgacaatgtgctttgcttgtttattttttcatctagCCTGTGGGATTCTTCAATTGTAGCCCAGCAATCGATGTTCCCCCAAGTGAGCATCAAGCCAATGCTGCCAAAGAGGATGTTGCTGCTGTTGTGAAACCCG
species | Selaginella moellendorffii |
transcript | EFJ19345 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TGGAAGACTGGCCTGTGATGCCTGTGGAACACCTTGGATTCTCGCTCGCG CCTGTGGGATTCTTCAATTGTAGCCCAGCAATCGATGTTCCCCCAAGTGAGEST: gi|169092717|gb|FE493685.1|FE493685
genomic: TGGAAGACTGGCCTGTGATGCCTGTGGAACACCTTGGATTCTCGCTCGCGgtaagaaaac ... tttcatctagCCTGTGGGATTCTTCAATTGTAGCCCAGCAATCGATGTTCCCCCAAGTGAG
EST: TGGAAGACTGGCCTGTGATGCCTGTGGAACACCTTGGATTCTCGCTCGCG CCTGTGGGATTCTTCAATTGTAGCCCAGCAATCGATGTTCCCCCAAGTGAGEST: gi|169095286|gb|FE499381.1|FE499381
genomic: TGGAAGACTGGCCTGTGATGCCTGTGGAACACCTTGGATTCTCGCTCGCGgtaagaaaac ... tttcatctagCCTGTGGGATTCTTCAATTGTAGCCCAGCAATCGATGTTCCCCCAAGTGAG
EST: TGGAAGACTGGCCTGTGATGCCTGTGGAACATCTTGGATTCTCGCTCGCG CCTGTGGGATTCTTCAATTGTAGTCCAGCAATCGATGTTCCTCCAAGTGAGEST: gi|169076431|gb|FE486033.1|FE486033
genomic: TGGAAGACTGGCCTGTGATGCCTGTGGAACACCTTGGATTCTCGCTCGCGgtaagaaaac ... tttcatctagCCTGTGGGATTCTTCAATTGTAGCCCAGCAATCGATGTTCCCCCAAGTGAG
EST: TGGAAGACTGGCCTGTGATGCCTGTGGAACACCTTGGATTCTCGCTCGCG CCTGTGGGATTCTTCAATTGTAGCCCAGCAATCGATGTTCCCCCAAGTGAGEST: gi|169069289|gb|FE480048.1|FE480048
genomic: TGGAAGACTGGCCTGTGATGCCTGTGGAACACCTTGGATTCTCGCTCGCGgtaagaaaac ... tttcatctagCCTGTGGGATTCTTCAATTGTAGCCCAGCAATCGATGTTCCCCCAAGTGAG
EST: TGGAAGACTGGCCTGTGATGCCTGTGGAACATCTTGGATTCTCGCTCGCG CCTGTGGGATTCTTCAATTGTAGTCCAGCAATCGATGTTCCTCCAAGTGAG
genomic: TGGAAGACTGGCCTGTGATGCCTGTGGAACACCTTGGATTCTCGCTCGCGgtaagaaaac ... tttcatctagCCTGTGGGATTCTTCAATTGTAGCCCAGCAATCGATGTTCCCCCAAGTGAG
tttgattaaaacattccattgacaatgtgctttgcttgtttattttttcatctagCCTGTGGGATTCTTCAATTGTAGCCCAGCAATCGATGTTCCCCCAAGTGAGCATCAAGCCAATGCTGCCAAAGAGGATGTTGCTGCTGTTGTGAAACCCG
cattgac putative branch site (score: 4)
cttgtttattttttc putative PPT
ttgtttattttttcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagaaaaccaacttctttgattaaaacattccattgacaatgtgctttgcttgtttattttttcatctagCCTGTGGGATTCTTCAATTGTAGCCCAGCAATCGATGTTCCCCCAAGTGAGCATCAAGCCAATGCTGCCAAAGAGGATGTTGCTGCTGTTGTGAAACCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT