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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTATAGCTCCTGGTTTATATGCTCCAGTTCACCAGCACTTTTTCGTGGCCAGAATGAATATGGCTGTCGACTGCGTCCCTGGAGAACAAGCAAACCAGgttcttcattcattatccatcgcttgttggtttttcacccgcgattgtttgcag

Basic information

species Selaginella moellendorffii
transcript EFJ19345
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169072736|gb|FE482273.1|FE482273
EST:     CCAGAATGAATATGGCTGTCGACTGCGTCCCTGGAGAACAAGCAAACCAG                         GTTGTGGAAGTTAACGTTCTCTCGGAGAAAGCAGGCTCGGACAATCCTCAC
genomic: CCAGAATGAATATGGCTGTCGACTGCGTCCCTGGAGAACAAGCAAACCAGgttcttcatt ... ttgtttgcagGTTGTGGAAGTTAACGTTCTCTCGGAGAAAGCAGGCTCGGACAATCCTCAC
EST: gi|169092717|gb|FE493685.1|FE493685
EST:     AGAATGAATATGGCTGTCGACTGCGTCCCTGGAGAACAAGCAAACCAG                         GTTGTGGAAGTTAACGTTCTCTCGGAGAAAGCAGGCTCGGACAATCCTCAC
genomic: AGAATGAATATGGCTGTCGACTGCGTCCCTGGAGAACAAGCAAACCAGgttcttcatt ... ttgtttgcagGTTGTGGAAGTTAACGTTCTCTCGGAGAAAGCAGGCTCGGACAATCCTCAC
EST: gi|169076431|gb|FE486033.1|FE486033
EST:     CCAGAATGAATATGGCTGTCGACTGCGTCCCTGGAGAACAAGCAAACCAG                         GTTGTGGAAGTTAACGTTCTCTCGGAGAAAGCAGGCTCGGACAATCCTCAC
genomic: CCAGAATGAATATGGCTGTCGACTGCGTCCCTGGAGAACAAGCAAACCAGgttcttcatt ... ttgtttgcagGTTGTGGAAGTTAACGTTCTCTCGGAGAAAGCAGGCTCGGACAATCCTCAC
EST: gi|169069289|gb|FE480048.1|FE480048
EST:     CCAGAATGAATATGGCTGTCGACTGCGTCCCTGGAGAACAAGCAAACCAG                         GTTGTGGAAGTTAACGTTCTCTCGGAGAAAGCAGGCTCGGACAATCCTCAC
genomic: CCAGAATGAATATGGCTGTCGACTGCGTCCCTGGAGAACAAGCAAACCAGgttcttcatt ... ttgtttgcagGTTGTGGAAGTTAACGTTCTCTCGGAGAAAGCAGGCTCGGACAATCCTCAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGTTATAGCTCCTGGTTTATATGCTCCAGTTCACCAGCACTTTTTCGTGGCCAGAATGAATATGGCTGTCGACTGCGTCCCTGGAGAACAAGCAAACCAGgttcttcattcattatccatcgcttgttggtttttcacccgcgattgtttgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCAA